Detail information of GWHGAAEX016619/evm.TU.scaffold_78.45


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743789646|ref|XP_010922955.1|4.43E-130PREDICTED: uncharacterized protein LOC105046134 [Elaeis guineensis]
trEMBLtr|B4G1F9|B4G1F9_MAIZE4.00E-124Uncharacterized protein {ECO:0000313|EMBL:ACF88202.1, ECO:0000313|EnsemblPlants:GRMZM2G099074_P01}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086854651871949+
Transcript Sequence

Network for GWHGAAEX016619

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07574.12SMC_Nse181884.00E-44
PF08746.10zf-RING-like2002422.80E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0030915Cellular ComponentSmc5-Smc6 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.260
SRR2545915Juvenile tuber7.220
SRP108465SRR5643513five period of Gastrodia elata9.050
SRR5643514five period of Gastrodia elata6.340
SRR5643515five period of Gastrodia elata8.510
SRR5643524five period of Gastrodia elata6.220
SRR5643525five period of Gastrodia elata9.760
SRR5643528five period of Gastrodia elata7.780
SRR5643658five period of Gastrodia elata6.440
SRR5643659five period of Gastrodia elata11.660
SRR5643660five period of Gastrodia elata11.380
SRR5643661five period of Gastrodia elata12.260
SRR5643662five period of Gastrodia elata13.520
SRR5643663five period of Gastrodia elata11.350
SRR5643664five period of Gastrodia elata12.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.670
SRR6049655Rhizomagastrodiae_C368-T10_good_15.520
SRR6049656Rhizomagastrodiae_C368-T07_good_18.830
SRR6049657Rhizomagastrodiae_C368-T07_good_16.920
SRR6049658Rhizomagastrodiae_C368-T04_good_17.840
SRR6049659Rhizomagastrodiae_C368-T04_good_18.380
SRR6049660Rhizomagastrodiae_C368-T01_good_19.560
SRR6049661Rhizomagastrodiae_C368-T04_good_19.110
SRR6049662Rhizomagastrodiae_C368-T01_good_110.270
SRR6049663Rhizomagastrodiae_C368-T01_good_18.170
SRR6049664Rhizomagastrodiae_C368-T10_good_18.740
SRR6049665Rhizomagastrodiae_C368-T10_good_18.740
SRP279888GastroGastrodia elata tuber 14.25
JuvenJuvenile tuber10.78
Mother_GastroMother tuber of Gastrodia elata 16.05
Mother_JuvenMother tuber of Juvenile 12.36