Detail information of GWHGAAEX016621/evm.TU.scaffold_78.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|372487665|ref|YP_005027230.1|4.00E-132isopropylmalate/homocitrate/citramalate synthase [Dechlorosoma suillum PS]
KOGKOG23688.00E-173Hydroxymethylglutaryl-CoA lyase
nrgi|672126794|ref|XP_008786857.1|0PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X2 [Phoenix dactylifera]
Swissprottr|O81027|HMGCL_ARATH3.00E-172Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|Q2PF06|Q2PF06_TRIPR0Putative hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:BAE71196.1} (Fragment)
TAIRAT2G268008.00E-173Aldolase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086891766898517-
Transcript Sequence

Network for GWHGAAEX016621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00682.18HMGL-like943682.20E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01640E4.1.3.4, HMGCL, hmgL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Cysteine and methionine metabolismmap00270
Geraniol degradationmap00281
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0004419Molecular Functionhydroxymethylglutaryl-CoA lyase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.360
SRR2545915Juvenile tuber22.480
SRP108465SRR5643513five period of Gastrodia elata22.550
SRR5643514five period of Gastrodia elata28.870
SRR5643515five period of Gastrodia elata34.850
SRR5643524five period of Gastrodia elata33.700
SRR5643525five period of Gastrodia elata115.380
SRR5643528five period of Gastrodia elata152.620
SRR5643658five period of Gastrodia elata150.370
SRR5643659five period of Gastrodia elata20.230
SRR5643660five period of Gastrodia elata23.880
SRR5643661five period of Gastrodia elata28.880
SRR5643662five period of Gastrodia elata37.410
SRR5643663five period of Gastrodia elata33.620
SRR5643664five period of Gastrodia elata32.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.850
SRR6049655Rhizomagastrodiae_C368-T10_good_129.310
SRR6049656Rhizomagastrodiae_C368-T07_good_126.750
SRR6049657Rhizomagastrodiae_C368-T07_good_121.730
SRR6049658Rhizomagastrodiae_C368-T04_good_124.510
SRR6049659Rhizomagastrodiae_C368-T04_good_128.220
SRR6049660Rhizomagastrodiae_C368-T01_good_122.600
SRR6049661Rhizomagastrodiae_C368-T04_good_125.430
SRR6049662Rhizomagastrodiae_C368-T01_good_128.770
SRR6049663Rhizomagastrodiae_C368-T01_good_127.080
SRR6049664Rhizomagastrodiae_C368-T10_good_131.750
SRR6049665Rhizomagastrodiae_C368-T10_good_131.750
SRP279888GastroGastrodia elata tuber 30.71
JuvenJuvenile tuber28.25
Mother_GastroMother tuber of Gastrodia elata 198.65
Mother_JuvenMother tuber of Juvenile 157.58