Gene detail

Detail information of GWHGAAEX016622/evm.TU.scaffold_78.49

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672140823\|ref\|XP_008794228.1\|	1.84E-143	PREDICTED: F-box protein At2g32560-like [Phoenix dactylifera]
Swissprot	tr\|Q6NLB1\|FB118_ARATH	1.00E-108	F-box protein At2g26850
trEMBL	tr\|F6HA97\|F6HA97_VITVI	3.00E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49089.1}
TAIR	AT2G26850	6.00E-89	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	901208	906924	-

Transcript Sequence
>GWHTAAEX016622 AAATCGAGTACTGCTAATTTTTTTGAAGTTTAACATTTTGGTGTATAATCCAGCGGCAAACCTCTTCTCAAGTTGGGACTGATAAAGAGTAAATCGATCTTTATCTCTTTCTCGGGGAGAACTGCGTTTTTCCGCCATTACTGCTCCTCTGGGTTCTTCCTCTATTGGTTAACCTAATCCGAGCTATTTCTCAACTACCACCCAACCAAAAAACGCTCTATAATCCCCATCAACATCTTCACAATCTCGCTAACTCATCTTCTCTGCTCCCGATGTTTCTCCTTCTCAAGCCCTTCACCCCCTTTCTTATGTTCCTCGTCAATCCTCTTCCTCACAAGCCCTTCCTCCCTTCATGGGTCTACGAACTGGGGCTTCTCGCAGCCTTGCTCTTCCAAGAATCCCTGCACCACTCTTTCGCATGGATCAAGAATCGAAGCATCTCGAAAACCCTGTGTCCTAAATCGCCGCTCTCACTCTCTTTCACGAACTGCAACTCATCGACTGGGATGCCGATCCTGGATTTGCCCGAGCTGGCCATTGAATGGATTCTAGAAAAGCTTTCGCCGGCCGATCTGTGCAGAATGGCTAATGTCTGCAGATCTTTCAGGGCGCGGTGCTCGAGCGATCATCTATGGAAGCGGCATATGATCGAGAAATGGAGCAGAATTCTCGGGCTAGCGGCTTGCCGGAAGCGAGAGCTTCAGGTCTCGTTGAAGAGGAACTCTGATGCCGCAGGAAGAGTTATGCCGAATGGATTGATGGGGTATGTGTGCTCTTTGTGGCCTCTTTCACGGCTTATGGGCAAGATGGTAGATGGAACAAAACCTAGGAGCGCTTTGCCTGCCGATTCACTCATTTCCTTCTATCTGGCACTCGAGAGCGGCAGATACTCCTTCCCAGCTCAGGTTTACAATCGCGAGAACGGGAATGCGGGATTTTTGATGTCATGTTATGATGCAGAGATTAGTTATAATAATCGTACAGACAAGTTCTATGCAAGGTATCCACCGCACGGTAAAATAGTTCCTCCAGTAGAAGAAGTGCCATGGGGAAGAATTAGAGCTCCTAAAGGTACATCTGCTCATGATCTTCACATCTCGGACTGTTTAAGCGACCTAAATCCTGGTGATCATATCGAGATTCAGTGGAGAAGAAACAAAGATTTCCCTTATGGTTGGTGGTATGGAGTTGTAGGCCATATGGAGGTCTGTGAAAGGGTTAAGCATCACTGCTGTTGTCATGCAAGTGATAGCATTGTGCTGGAGTTCAACCACTTCGAGCGAGGCTCTCGGTGGCGGCGAAAAACCATCAGCAGGAGGAGTCACGGAGAGGATGGGAATGAAATTGATGGGTTCTATGGGGGGATCAGAAAAATTCAAGAGGAGGAGATCTCTGTGTGGATGCATTTCTGGCCAGCTGATGCTTCTTCTGTAATACTAGAAGACTAGCAACTCTGCTATCATGTAAGTAAGCTAGGAGCTGATGAAAATGTCTTTTACTTGGTATTTTTTTCTTTATTTTTAGGCTTTAGTGTTTAGGATTTAGAGGTTAGCGTTTAGGGTTTAGATTGGAGCATTTTGTAGTTAAAGGGCAATCAAAGATATGAATTGCAACTCATGCCTTTTATTTTGCATTTAACATCAATGAGAACAAATTCAGGTGCGAATTCGGTTCATATGCTTTAAATTACTAGCTTTCTAAAATTTAAAATTTAGAGTTTTCTCGTTGAATTATTTTGCGTTGAGCTGATTCTACTTGAATCAAGCTCGGCTTAAGTTGTGTTCAATCTTGCCTCGCTCTATGCGTCGACCTCCTTTTCTAGGGTTGGATTTTTTTCTTATATATATATGTCTCAGTGCTAATCTCAAAATTCTTAAATATTTATAATTTTTATTGAGAAACTGATTTTTTGTGTGTATAATAAAATTACTCTTCTCATAAATAATCTTAGAAATTAAGCTTCCATGAATCAATCGTCGAGCATTTTGATGTTTTCTCTGCCAATTGATAGAAATCATTAGCATCTTTCGACTGAAGGCATATACTAGAGAATAAATTTTGTTGATTTCTTATTTATTTGGTTTCAAAATAGTTCTCAAAGATAAATGATTATGATTTAAATTTAAAATATGTATGTTTAGTAGGTTTTGTATACACAATTGTGTTTGATTCTGATTTTTTGCAAGATAATTTTTTTATATATTTTTTGAAACCATATAATTTAAGCCTCTTAAACCCAATAAACTAGTTTATTGTAACAAAGCTCAAGTCATAGGAACATGCAAGGAGTAAAAAATTATTGCCTATATAGTGCATTACCTTTTAGTAAAATTCTATATCAAACTACATTGCAACATAAATAATCTTAAAGAATAAATCAATACTCCTCCTCGTGCGGCGGTGGCGGCGGCACTCTCTCCGGAGGGTACCCGATCCCGTGACGCTCGTTCGGGAACACGGCAAAGATGGTGCTGGCGACCGCGCCAATGACGGCAGGCAAGATCTTGATTAGGGTCCCCTCTGCCGTCTCCGCCGTTGGATAAAAGCACCGAACGGTGTTCGGGTCAAGCAGTGCCACGGCCGCGAACACCGTGAGGGACAGCGCGGCGTGCACGAAGTCCGCAGCCCTGAGCTTGTACCCGGATAGGTCCCGTCGGGCCGCGTCCGGGTCGGAGAAGGCCCAAAGGCCGGCCCGTGTGGCGATGCCGTAGAAGACACGGCCGCCGACGAAATAGCTGTCGGTGAAGGACGAGAGGCAACAGGAGAGGCCGCAGCATGCGAGGAGGAGACCGGATAGTCCACGGCTAGCCGGGCCTGCGCAGCGCCCGTTGTCCGTGACCAGGGGGCTCATAAACTGGAACACGAAGACGGTGCCGCTCGGCAGGAGCTTGATCAGGTCGCCCAATCCCTGGAAGGCCCTCTCCCCCATGTTCAATCCCACCCTCTTCTCTTCTTTCATCATGCTTTTTGTTCTTGCCATGCTCGAAGCTTTCTATGGGCCTTTGTTTTGGCTTGGTAGTGTATTTATAGGGAGAAATGGGGACAAGCAATTTTAGGTGTGCTTGACACTCTGATAAGGACTCCTCACTCTTTTGGTGCTTTCTTATACGTTCAGTTTCTTAAATACAATCGTTG

Network for GWHGAAEX016622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	79	124	2.50E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.290
SRP064423	SRR2545915	Juvenile tuber	7.240
SRP108465	SRR5643513	five period of Gastrodia elata	10.990
	SRR5643514	five period of Gastrodia elata	7.360
	SRR5643515	five period of Gastrodia elata	11.260
	SRR5643524	five period of Gastrodia elata	8.200
	SRR5643525	five period of Gastrodia elata	13.220
	SRR5643528	five period of Gastrodia elata	8.050
	SRR5643658	five period of Gastrodia elata	14.870
	SRR5643659	five period of Gastrodia elata	5.460
	SRR5643660	five period of Gastrodia elata	6.170
	SRR5643661	five period of Gastrodia elata	5.610
	SRR5643662	five period of Gastrodia elata	9.220
	SRR5643663	five period of Gastrodia elata	8.200
	SRR5643664	five period of Gastrodia elata	4.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.800
SRP279888	Gastro	Gastrodia elata tuber	6.23
	Juven	Juvenile tuber	7.80
	Mother_Gastro	Mother tuber of Gastrodia elata	18.24
	Mother_Juven	Mother tuber of Juvenile	22.37