Detail information of GWHGAAEX016627/evm.TU.scaffold_78.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672192084|ref|XP_008775674.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LIQ7|PP252_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g24000, mitochondrial (Precursor) |
| trEMBL | tr|F6GZB2|F6GZB2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45298.1} |
| TAIR | AT3G24000 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 945218 | 948862 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016627
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 121 | 167 | 5.80E-13 |
| PF01535.19 | PPR | 196 | 220 | 0.015 |
| PF13041.5 | PPR_2 | 221 | 269 | 6.30E-12 |
| PF13041.5 | PPR_2 | 322 | 373 | 8.40E-10 |
| PF01535.19 | PPR | 399 | 423 | 0.63 |
| PF01535.19 | PPR | 472 | 494 | 1.2 |
| PF14432.5 | DYW_deaminase | 498 | 621 | 7.60E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.690 |
| SRR2545915 | Juvenile tuber | 2.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.890 |
| SRR5643514 | five period of Gastrodia elata | 6.060 | |
| SRR5643515 | five period of Gastrodia elata | 4.700 | |
| SRR5643524 | five period of Gastrodia elata | 5.330 | |
| SRR5643525 | five period of Gastrodia elata | 3.540 | |
| SRR5643528 | five period of Gastrodia elata | 3.400 | |
| SRR5643658 | five period of Gastrodia elata | 2.320 | |
| SRR5643659 | five period of Gastrodia elata | 6.310 | |
| SRR5643660 | five period of Gastrodia elata | 6.700 | |
| SRR5643661 | five period of Gastrodia elata | 7.620 | |
| SRR5643662 | five period of Gastrodia elata | 8.230 | |
| SRR5643663 | five period of Gastrodia elata | 7.260 | |
| SRR5643664 | five period of Gastrodia elata | 6.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.16 |
| Juven | Juvenile tuber | 8.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.22 | |
| Mother_Juven | Mother tuber of Juvenile | 7.72 |