Detail information of GWHGAAEX016628/evm.TU.scaffold_78.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG48131.00E-41Translation initiation factor eIF3, p35 subunit
nrgi|641838584|gb|KDO57525.1|6.50E-54hypothetical protein CISIN_1g047577mg, partial [Citrus sinensis]
trEMBLtr|A0A067EUF0|A0A067EUF0_CITSI2.00E-54Uncharacterized protein {ECO:0000313|EMBL:KDO57525.1} (Fragment)
TAIRAT1G660701.00E-41Translation initiation factor eIF3 subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086949613955786-
Transcript Sequence

Network for GWHGAAEX016628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08597.9eIF3_subunit151304.90E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03245EIF3J RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005737Cellular Componentcytoplasm
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.530
SRR2545915Juvenile tuber0.400
SRP108465SRR5643513five period of Gastrodia elata0.200
SRR5643514five period of Gastrodia elata0.750
SRR5643515five period of Gastrodia elata1.290
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.300
SRR5643659five period of Gastrodia elata0.160
SRR5643660five period of Gastrodia elata0.530
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.180
SRR5643663five period of Gastrodia elata0.270
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.980
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_11.310
SRR6049657Rhizomagastrodiae_C368-T07_good_10.440
SRR6049658Rhizomagastrodiae_C368-T04_good_11.480
SRR6049659Rhizomagastrodiae_C368-T04_good_10.870
SRR6049660Rhizomagastrodiae_C368-T01_good_10.160
SRR6049661Rhizomagastrodiae_C368-T04_good_11.200
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.530
SRR6049665Rhizomagastrodiae_C368-T10_good_10.530
SRP279888GastroGastrodia elata tuber 0.07
JuvenJuvenile tuber0.97
Mother_GastroMother tuber of Gastrodia elata 0.13
Mother_JuvenMother tuber of Juvenile 0.67