Detail information of GWHGAAEX016631/evm.TU.scaffold_78.57


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG15885.00E-133RNA-binding protein Sam68 and related KH domain proteins
nrgi|672119497|ref|XP_008782987.1|3.15E-161PREDICTED: KH domain-containing protein At5g56140 [Phoenix dactylifera]
Swissprottr|Q9FKT4|QKIL2_ARATH2.00E-133KH domain-containing protein At5g56140
trEMBLtr|U5DF87|U5DF87_AMBTC4.00E-158Uncharacterized protein {ECO:0000313|EMBL:ERN19068.1}
TAIRAT5G561405.00E-133RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000869970271010803-
Transcript Sequence

Network for GWHGAAEX016631

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16544.4STAR_dimer37723.20E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms134.500
SRR2545915Juvenile tuber59.240
SRP108465SRR5643513five period of Gastrodia elata35.200
SRR5643514five period of Gastrodia elata28.220
SRR5643515five period of Gastrodia elata27.330
SRR5643524five period of Gastrodia elata24.660
SRR5643525five period of Gastrodia elata58.500
SRR5643528five period of Gastrodia elata42.210
SRR5643658five period of Gastrodia elata49.580
SRR5643659five period of Gastrodia elata58.660
SRR5643660five period of Gastrodia elata76.740
SRR5643661five period of Gastrodia elata71.240
SRR5643662five period of Gastrodia elata97.710
SRR5643663five period of Gastrodia elata74.720
SRR5643664five period of Gastrodia elata117.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.040
SRR6049655Rhizomagastrodiae_C368-T10_good_129.900
SRR6049656Rhizomagastrodiae_C368-T07_good_140.500
SRR6049657Rhizomagastrodiae_C368-T07_good_172.740
SRR6049658Rhizomagastrodiae_C368-T04_good_167.550
SRR6049659Rhizomagastrodiae_C368-T04_good_180.420
SRR6049660Rhizomagastrodiae_C368-T01_good_154.570
SRR6049661Rhizomagastrodiae_C368-T04_good_151.470
SRR6049662Rhizomagastrodiae_C368-T01_good_134.960
SRR6049663Rhizomagastrodiae_C368-T01_good_137.040
SRR6049664Rhizomagastrodiae_C368-T10_good_128.420
SRR6049665Rhizomagastrodiae_C368-T10_good_128.420
SRP279888GastroGastrodia elata tuber 81.10
JuvenJuvenile tuber43.44
Mother_GastroMother tuber of Gastrodia elata 36.17
Mother_JuvenMother tuber of Juvenile 38.94