Gene detail

Detail information of GWHGAAEX016636/evm.TU.scaffold_78.63

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0027	9.00E-80	Calmodulin and related proteins (EF-Hand superfamily)
nr	gi\|672119479\|ref\|XP_008782977.1\|	5.44E-98	PREDICTED: probable calcium-binding protein CML21 [Phoenix dactylifera]
Swissprot	tr\|Q52K82\|CML21_ARATH	1.00E-80	Probable calcium-binding protein CML21
trEMBL	tr\|M0TI73\|M0TI73_MUSAM	4.00E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P16860_001}
TAIR	AT4G26470	9.00E-80	Calcium-binding EF-hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	1156464	1183201	+

Transcript Sequence
>GWHTAAEX016636 GGCACACATTTTCTCCGCCTGCTTGTCCTGGAAGAGTCCGAACGGGCTGGGCTATCCCTAAATAAAGCACAAAACCCTCTATCCAGCGCGAGTTCAATGGCGCTTGTTTCACAAGAGCTGCCTCTCAATTCCTCTTCGCATGACGTCTAGCGCATTGTTCTCCTCTCCCAACAGATTTCAACCAACATTTCAAAGCACAATCGTCTTTCCCGGAAAGAGATTGTTCCATATTTGCCTTTGTTTTTGATCGTTTAGATTTTGAAACTTTGTGAAAGAAGAGGCAGAATTAAGGTGACTTTAGTAAGTGTACTTCACATCTTGCATGCCATCTTTTCTTGTGCACTGAGATGGGAGGTGCTTTGGGAAAGAAACAGCCTACAAAGGGTTCGTTACCAGAATCAAAACTTGATGCCAAGATGGTTGAGGCTATGCGCCAAAGAGCTGTAAGAGGAAGTACCATGAAATCATTTAATACTATCATTTTAAAGTTTCCTAAAATTGATGAGAGCTTCAGAAATTGCAGGATTATATTTGAACAATTTGATGAAGATTCTAATGGTGCAATAGATCCAGAAGAACTTAAGCATTGTTTTCAAAAACTGCATGTTGATTTTACACAAGAGGAGATCAATGACATATTCAAAGCTTGTGACATTGATGAAAATATGGTAATTAAGTTCAACGAGTTCATTGTTCTGCTATGCCTTGTTTATTTACTCAAGGAGCCGACAACCATGCAGGCAACATCAGGATTAGGATTACCAGACCTGAAGTTGGCATTTCAGACTTTGGTTGATGCCTTTGTATTTCTTGACAAAAACAAGGATGGACATGTCAGCAAGTCTGAGATGGTTGAAGCCATAAACGAGTCTACATCAGGTGGACGATCATCGGGACGGATAGCTATGAGGAGATTTGGCACCGGAATACTTTTCAAATGCACATTCAATAATGTTGAAGCGTTGAAGATGTTATGGATGTCGAAAGCATTGATGACGTCGTGGAGGTCGGAAGAGTCGACGACGCCGTGGACGCCGGAAGTGGAGCTGACATTGGACTTCTCTGCGCCGACGGCGCCAACGACGGCTTGAGTCTTCATCTGACCTTTTTCTCTGCATCGACGGCGGTTCTCACTACGTCAACAACGTCGACGCCGGTTGTCTTTAGCTGCGTCAACCGTCTGATCCTTCGTCCATGTTGATTCCAACATCTGTGTTTGTGCAGCCTTGGAAAAAAATGCTGTGAAATTTTATTAGCTTAATTTTAAAAAGGAAATATTTACCCATTTGTTTTCATTCAAACTAATGGCATATTACCAAAAAAAACAATTAACTCAAAGTTAAGGGGACATTTTGACAATTTTCTCTATAATTAATTAAATTGTTTAGCTTTTGTATTAGTCTATTCAGCTTTTTTATGCTTTTATCTATTTTACTGATCTTGTTTTTTTTTTCTAATGGCTATATTTATTGAAATATTGAGCCAGTAGTTCTTGACCGTTATTGCTTTAATAGGTTGCTATTTGGGATTTATTTTTATCTGACTAAATTGGGTGCTGAATTGTAAACATATTAGATTATAAGGTAATATATGGTAAAAATCTAATATACGTGAAACAAATACTAAGTTACAAGGGCCTATTTCTAGCTTTAAAACTTTTAAGGACTTAAGTGGAACAAAAAGTAAATTATAAGAAATAATTAAGAACCTTTTGAGTTTTAAAGATTGAAATAAAACTTAAGATAAATAATAAAGACTAAAGTGTATTTATCTTATTTTTTATTTCTATTATATTAGAAAATTGTTCTCCAAGATTATATATTATGTATATAAGACAGCCCAAAGCCCATTTATTATTTAGAAGCCTCATTAAAGTAAAAGCATTTTTGTTGGGAATAAATTTTGATGAATAGCGTCTTAT

Network for GWHGAAEX016636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.5	EF-hand_7	58	116	1.70E-09
PF13202.5	EF-hand_5	148	168	0.00021

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.870
SRP064423	SRR2545915	Juvenile tuber	45.100
SRP108465	SRR5643513	five period of Gastrodia elata	16.940
	SRR5643514	five period of Gastrodia elata	19.560
	SRR5643515	five period of Gastrodia elata	16.490
	SRR5643524	five period of Gastrodia elata	18.070
	SRR5643525	five period of Gastrodia elata	18.680
	SRR5643528	five period of Gastrodia elata	20.790
	SRR5643658	five period of Gastrodia elata	19.430
	SRR5643659	five period of Gastrodia elata	19.540
	SRR5643660	five period of Gastrodia elata	17.950
	SRR5643661	five period of Gastrodia elata	17.510
	SRR5643662	five period of Gastrodia elata	20.260
	SRR5643663	five period of Gastrodia elata	21.300
	SRR5643664	five period of Gastrodia elata	20.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.900
SRP279888	Gastro	Gastrodia elata tuber	24.79
	Juven	Juvenile tuber	21.46
	Mother_Gastro	Mother tuber of Gastrodia elata	19.52
	Mother_Juven	Mother tuber of Juvenile	29.31