Gene detail

Detail information of GWHGAAEX016637/evm.TU.scaffold_78.65

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672119481\|ref\|XP_008782978.1\|	3.48E-118	PREDICTED: myb family transcription factor APL-like [Phoenix dactylifera]
Swissprot	tr\|Q8GUN5\|PHL1_ARATH	8.00E-50	Protein PHR1-LIKE 1
trEMBL	tr\|A0A067GTH1\|A0A067GTH1_CITSI	4.00E-115	Uncharacterized protein {ECO:0000313\|EMBL:KDO78616.1}
TAIR	AT2G01060	2.00E-94	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	1190884	1201807	-

Transcript Sequence
>GWHTAAEX016637 AAAATGTTCTGACTAGGTAACCTTCTTAATATTTAAAATATGAATAATAAGCATGACAGTAGGCAAACCATACGTAAACCTTAGGTCTCATTTTTTTTACAACCTCCTATATATAATATCAAGTGAAGTTCAGGTTGCATATAAGATGTACTATCACTTGTTGCAACAATGAGCATCACAATGGACAGCTATGGCACCATGCAGGCTTTTATTTTGTAACTCAACTCTATTATTATATTTTCTTGCAACTTATCTATGTGATTGGCTTAGTGGTTGTGGTGTTGTTATTTATGTGACCGATAACTGGTGTAATTAAATGTGATGTGTATAGCCGATGGGATTAAACTGAACTGCAACTAATTAATAGATTACGGAGAATCTTTTATAATGTTGAAATTACCACAAGTAAACTTGCTTAATTACGTCTTGTCAGCTTATTTTTTAAAAACAGTTTTACCAAATTTCTTTTCATTTTTACGGCAAATTTTGCACTAAAAGGAGAAGTATAACCGAATGGTTAAATATATCATTTTTATTATAGTTAGGGACTATATTGATTATTTTTGAAAGTTAAGGATCAAAATAAAGCATTTTTTGATACTTGAGGGACAATTTTGATAAATTATTCTTTTCTCTTTTGGCCATTCTTGATAAGATCAAACAGTATTTCATCTCTCTGTAACGGTACTTGCATTTGTGGGAGTTTATTTATTGCAAGTAAACAAAGGAGAGGTTAATCATTTGTTGATTTAATTTGATGGAGCTGCATTCCCTTTCTTGAAACTTATCTTATAAAATATAGAATTTTTGAGGGACAGGAAGTCGCCTTTATTTTTGTGTTTTTACTTATAAAAATCGTGTATTAGTGTTAGATTGAAGTGTTGGCTGGAGTTCTACTCTTACTTAAAATACTAATAATGGAAAAGATGCGTGTATAATAAAGAAACTCAGTGTAGCTAAGAAAACTAATAGAAATCATTGCAATTAAAATTTATTTGACTTCTGGAGCTGAGATCCAAACACTTACACTGGAACAAATAGGTCTTTACAGGGTGCCACAATGATTTGCTCATTGAAGTTTAATTTCAAATGCTCAAGTCAAAAAGCATCACTTTCGACCTTGTCATATTGTAGCCAAAAAGGCTTTAAAGCCTCTTTATTTCTGATTACAAAAAGGGAAAAAATATGAGCTCCATTTAGTGTCCTCATTCTTTTGTTTATTCTAAACAAGAAACTGATTAATCTCATTCATTTTACTGATATTGGAATTACTGGGAGATGCATTTTTCCTTGGATGAATGAAGTGTGGTGTATTAAAAGTATGGATAATGATTATGCAGTTTAGTGCTATGTAGGTCAACATCTTGTAATTTGCTCTTATAGTTAAATTTCATTTTTTAATTAAATTATGGCATTCAATGCCTGCACCTTGAACTTTCTTATGCTTTCCATGCAGCTAATTATTTTACTTCTTTGATTAATGCAGGTTGACAAATGTATCAGCCTTCCCTTTCTAATATAAGCCTGGCAAGCTGCACTTCACTGGTTCATGATCAGCACATGGAAATGAATAGTGCTTCTATGTCTCCACATGGTGGAGGAAATAACCCAAGTAACCCTGGCGCAGCTGCAAGGCAGCGATTGCGCTGGACAAATGAACTTCATGAGCGATTTGTGGATGCTGTCACCCAACTTGGCGGGCCTGATAGAGCCACTCCTAAAGGTGTGCTTAGGGTTATGGGTGTGCAAGGTTTGACCATATACCACGTTAAAAGCCACTTGCAGAAATACCGTCTTGCAAAGTTCCTTCCAGACTCATTAGCTGAAGGTGCAAAAATTGAAAAGAAAGATTCCGATGATGTTCTTTCTAACCTCGATAATTCCACCGGGATGCAAATAACTGAAGCACTCAAGTTGCAGATGGAGGTGCAAAAGCGGCTACATGAGCAATTAGAGGTTCAAAGGCAGCTGCAGCTTAGGATAGAAGCTCAAGGGAAGTATCTTAAGAAGATAATTGAGGAACAGCAGCGGATCAGTGGCGGCAATGGTGGATTAGCTCCAACCTCATTCAACCAAGGCTTAGAAGACAATAAGAGTGACCCCTCAACCCCTGTACCAGTTACCAGGCCCTCTCTCCAAGAGAAATCCTGTGGTAGTCTCTTTAAGAGCCTTTCTTTCGAGGACTCTCATCACGGCCCCCTTACTCCAGACACAGGATCACCATCTGCAAGCCCTCACCACGAGCGTTCAGTCAAGAGGCAAAGGGATAGCGATAGCCCAAAGCAGGAACTTATGCTTGGCCATCATATTCTTGAGTCAAGTTCTAGCTCCTTGTTCATGGGCAGTGGTCTTTAA

Network for GWHGAAEX016637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	49	100	4.10E-09
PF14379.5	Myb_CC_LHEQLE	133	179	1.00E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.080
SRP064423	SRR2545915	Juvenile tuber	17.200
SRP108465	SRR5643513	five period of Gastrodia elata	14.540
	SRR5643514	five period of Gastrodia elata	14.810
	SRR5643515	five period of Gastrodia elata	15.950
	SRR5643524	five period of Gastrodia elata	16.370
	SRR5643525	five period of Gastrodia elata	19.030
	SRR5643528	five period of Gastrodia elata	24.100
	SRR5643658	five period of Gastrodia elata	22.740
	SRR5643659	five period of Gastrodia elata	17.160
	SRR5643660	five period of Gastrodia elata	18.540
	SRR5643661	five period of Gastrodia elata	19.910
	SRR5643662	five period of Gastrodia elata	19.010
	SRR5643663	five period of Gastrodia elata	18.270
	SRR5643664	five period of Gastrodia elata	18.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.230
SRP279888	Gastro	Gastrodia elata tuber	22.61
	Juven	Juvenile tuber	20.12
	Mother_Gastro	Mother tuber of Gastrodia elata	38.91
	Mother_Juven	Mother tuber of Juvenile	22.10