Detail information of GWHGAAEX016638/evm.TU.scaffold_78.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428307095|ref|YP_007143920.1| | 8.00E-74 | Cl- channel voltage-gated family protein [Crinalium epipsammum PCC 9333] |
| KOG | KOG0475 | 0 | Cl- channel CLC-3 and related proteins (CLC superfamily) |
| nr | gi|743766049|ref|XP_010913253.1| | 0 | PREDICTED: chloride channel protein CLC-f-like [Elaeis guineensis] |
| Swissprot | tr|Q8RXR2|CLCF_ARATH | 0 | Chloride channel protein CLC-f |
| trEMBL | tr|M0RN23|M0RN23_MUSAM | 0 | Chloride channel protein {ECO:0000256|RuleBase:RU361221} |
| TAIR | AT1G55620 | 0 | chloride channel F |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1209680 | 1256381 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016638
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00654.19 | Voltage_CLC | 176 | 504 | 2.90E-71 |
| PF00571.27 | CBS | 571 | 623 | 1.00E-08 |
| PF00571.27 | CBS | 662 | 708 | 0.0033 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006821 | Biological Process | chloride transport |
| GO:0005247 | Molecular Function | voltage-gated chloride channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.810 |
| SRR2545915 | Juvenile tuber | 28.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.320 |
| SRR5643514 | five period of Gastrodia elata | 20.820 | |
| SRR5643515 | five period of Gastrodia elata | 17.710 | |
| SRR5643524 | five period of Gastrodia elata | 19.040 | |
| SRR5643525 | five period of Gastrodia elata | 36.340 | |
| SRR5643528 | five period of Gastrodia elata | 29.600 | |
| SRR5643658 | five period of Gastrodia elata | 37.750 | |
| SRR5643659 | five period of Gastrodia elata | 19.100 | |
| SRR5643660 | five period of Gastrodia elata | 20.410 | |
| SRR5643661 | five period of Gastrodia elata | 19.280 | |
| SRR5643662 | five period of Gastrodia elata | 16.190 | |
| SRR5643663 | five period of Gastrodia elata | 19.090 | |
| SRR5643664 | five period of Gastrodia elata | 17.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.24 |
| Juven | Juvenile tuber | 29.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.36 | |
| Mother_Juven | Mother tuber of Juvenile | 34.93 |