Detail information of GWHGAAEX016641/evm.TU.scaffold_78.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30504.00E-159COP9 signalosome, subunit CSN6
nrgi|672172190|ref|XP_008806180.1|0PREDICTED: COP9 signalosome complex subunit 6a-like [Phoenix dactylifera]
Swissprottr|Q8W206|CSN6A_ARATH0COP9 signalosome complex subunit 6a
trEMBLtr|A0A067G2R2|A0A067G2R2_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO73934.1}
TAIRAT5G562804.00E-159COP9 signalosome subunit 6A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008612702381306604-
Transcript Sequence

Network for GWHGAAEX016641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01398.20JAB71341.30E-25
PF13012.5MitMem_reg1822961.70E-25
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0000338Biological Processprotein deneddylation
GO:0005515Molecular Functionprotein binding
GO:0008180Cellular ComponentCOP9 signalosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.110
SRR2545915Juvenile tuber16.220
SRP108465SRR5643513five period of Gastrodia elata20.400
SRR5643514five period of Gastrodia elata21.720
SRR5643515five period of Gastrodia elata17.270
SRR5643524five period of Gastrodia elata18.070
SRR5643525five period of Gastrodia elata8.990
SRR5643528five period of Gastrodia elata12.630
SRR5643658five period of Gastrodia elata9.510
SRR5643659five period of Gastrodia elata17.780
SRR5643660five period of Gastrodia elata17.270
SRR5643661five period of Gastrodia elata20.900
SRR5643662five period of Gastrodia elata22.480
SRR5643663five period of Gastrodia elata18.060
SRR5643664five period of Gastrodia elata19.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.420
SRR6049655Rhizomagastrodiae_C368-T10_good_132.700
SRR6049656Rhizomagastrodiae_C368-T07_good_119.010
SRR6049657Rhizomagastrodiae_C368-T07_good_114.460
SRR6049658Rhizomagastrodiae_C368-T04_good_115.810
SRR6049659Rhizomagastrodiae_C368-T04_good_112.380
SRR6049660Rhizomagastrodiae_C368-T01_good_116.330
SRR6049661Rhizomagastrodiae_C368-T04_good_116.880
SRR6049662Rhizomagastrodiae_C368-T01_good_126.780
SRR6049663Rhizomagastrodiae_C368-T01_good_122.330
SRR6049664Rhizomagastrodiae_C368-T10_good_128.070
SRR6049665Rhizomagastrodiae_C368-T10_good_128.070
SRP279888GastroGastrodia elata tuber 17.78
JuvenJuvenile tuber32.11
Mother_GastroMother tuber of Gastrodia elata 16.32
Mother_JuvenMother tuber of Juvenile 22.20