Detail information of GWHGAAEX016643/evm.TU.scaffold_78.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|330466526|ref|YP_004404269.1|1.00E-40methionine-r-sulfoxide reductase [Verrucosispora maris AB-18-032]
KOGKOG08569.00E-66Predicted pilin-like transcription factor
nrgi|449432763|ref|XP_004134168.1|1.67E-69PREDICTED: peptide methionine sulfoxide reductase B5-like isoform 1 [Cucumis sativus]
Swissprottr|Q9C5C8|MSRB2_ARATH4.00E-68Peptide methionine sulfoxide reductase B2, chloroplastic (Precursor)
trEMBLtr|A0A0A0L5Q0|A0A0A0L5Q0_CUCSA6.00E-70Uncharacterized protein {ECO:0000313|EMBL:KGN57043.1}
TAIRAT4G048309.00E-66methionine sulfoxide reductase B5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008613851921386823-
Transcript Sequence

Network for GWHGAAEX016643

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01641.17SelR131293.00E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0033743Molecular Functionpeptide-methionine (R)-S-oxide reductase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.480
SRR2545915Juvenile tuber57.970
SRP108465SRR5643513five period of Gastrodia elata79.490
SRR5643514five period of Gastrodia elata74.730
SRR5643515five period of Gastrodia elata71.480
SRR5643524five period of Gastrodia elata71.360
SRR5643525five period of Gastrodia elata136.140
SRR5643528five period of Gastrodia elata84.660
SRR5643658five period of Gastrodia elata105.030
SRR5643659five period of Gastrodia elata90.400
SRR5643660five period of Gastrodia elata113.430
SRR5643661five period of Gastrodia elata93.410
SRR5643662five period of Gastrodia elata96.490
SRR5643663five period of Gastrodia elata85.700
SRR5643664five period of Gastrodia elata98.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_187.310
SRR6049655Rhizomagastrodiae_C368-T10_good_162.530
SRR6049656Rhizomagastrodiae_C368-T07_good_184.530
SRR6049657Rhizomagastrodiae_C368-T07_good_187.880
SRR6049658Rhizomagastrodiae_C368-T04_good_1100.710
SRR6049659Rhizomagastrodiae_C368-T04_good_1104.200
SRR6049660Rhizomagastrodiae_C368-T01_good_170.320
SRR6049661Rhizomagastrodiae_C368-T04_good_187.330
SRR6049662Rhizomagastrodiae_C368-T01_good_188.520
SRR6049663Rhizomagastrodiae_C368-T01_good_175.150
SRR6049664Rhizomagastrodiae_C368-T10_good_192.060
SRR6049665Rhizomagastrodiae_C368-T10_good_192.060
SRP279888GastroGastrodia elata tuber 89.99
JuvenJuvenile tuber73.00
Mother_GastroMother tuber of Gastrodia elata 85.51
Mother_JuvenMother tuber of Juvenile 57.62