Detail information of GWHGAAEX016651/evm.TU.scaffold_78.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434386451|ref|YP_007097062.1| | 2.00E-20 | glycerophosphoryl diester phosphodiesterase [Chamaesiphon minutus PCC 6605] |
| KOG | KOG2258 | 4.00E-147 | Glycerophosphoryl diester phosphodiesterase |
| nr | gi|743765905|ref|XP_010913178.1| | 0 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL4 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FJ62|GPDL4_ARATH | 1.00E-147 | Glycerophosphodiester phosphodiesterase GDPDL4 {ECO:0000305} (Precursor) |
| trEMBL | tr|C0PL13|C0PL13_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:ACN35879.1} |
| TAIR | AT5G55480 | 4.00E-147 | SHV3-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1574605 | 1592943 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016651
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03009.16 | GDPD | 81 | 339 | 2.00E-07 |
| PF03009.16 | GDPD | 366 | 397 | 1.40E-05 |
| PF03009.16 | GDPD | 406 | 552 | 1.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0008081 | Molecular Function | phosphoric diester hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.380 |
| SRR2545915 | Juvenile tuber | 49.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 55.510 |
| SRR5643514 | five period of Gastrodia elata | 35.850 | |
| SRR5643515 | five period of Gastrodia elata | 34.640 | |
| SRR5643524 | five period of Gastrodia elata | 39.140 | |
| SRR5643525 | five period of Gastrodia elata | 25.150 | |
| SRR5643528 | five period of Gastrodia elata | 38.310 | |
| SRR5643658 | five period of Gastrodia elata | 30.020 | |
| SRR5643659 | five period of Gastrodia elata | 25.720 | |
| SRR5643660 | five period of Gastrodia elata | 20.220 | |
| SRR5643661 | five period of Gastrodia elata | 24.550 | |
| SRR5643662 | five period of Gastrodia elata | 15.500 | |
| SRR5643663 | five period of Gastrodia elata | 19.920 | |
| SRR5643664 | five period of Gastrodia elata | 14.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 81.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 70.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 70.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.60 |
| Juven | Juvenile tuber | 32.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.02 | |
| Mother_Juven | Mother tuber of Juvenile | 33.80 |