Detail information of GWHGAAEX016652/evm.TU.scaffold_78.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 4.00E-42 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743765824|ref|XP_010913138.1| | 0 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Elaeis guineensis] |
| Swissprot | tr|Q9FL51|Y5694_ARATH | 0 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 (Precursor) |
| trEMBL | tr|F6HL59|F6HL59_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55166.1} |
| TAIR | AT5G06940 | 0 | Leucine-rich repeat receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1595713 | 1602175 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016652
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 31 | 68 | 1.10E-10 |
| PF13855.5 | LRR_8 | 123 | 179 | 1.40E-08 |
| PF00560.32 | LRR_1 | 461 | 482 | 0.57 |
| PF07714.16 | Pkinase_Tyr | 598 | 863 | 8.70E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.000 |
| SRR2545915 | Juvenile tuber | 7.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.440 |
| SRR5643514 | five period of Gastrodia elata | 7.660 | |
| SRR5643515 | five period of Gastrodia elata | 4.810 | |
| SRR5643524 | five period of Gastrodia elata | 7.010 | |
| SRR5643525 | five period of Gastrodia elata | 3.320 | |
| SRR5643528 | five period of Gastrodia elata | 3.950 | |
| SRR5643658 | five period of Gastrodia elata | 3.050 | |
| SRR5643659 | five period of Gastrodia elata | 10.060 | |
| SRR5643660 | five period of Gastrodia elata | 7.920 | |
| SRR5643661 | five period of Gastrodia elata | 8.660 | |
| SRR5643662 | five period of Gastrodia elata | 6.650 | |
| SRR5643663 | five period of Gastrodia elata | 7.640 | |
| SRR5643664 | five period of Gastrodia elata | 6.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.62 |
| Juven | Juvenile tuber | 5.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.78 | |
| Mother_Juven | Mother tuber of Juvenile | 3.41 |