Detail information of GWHGAAEX016653/evm.TU.scaffold_78.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 5.00E-25 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 1.00E-129 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|743767343|ref|XP_010913931.1| | 2.75E-134 | PREDICTED: ras-related protein RGP1-like [Elaeis guineensis] |
| Swissprot | tr|P25766|RLGP1_ORYSJ | 1.00E-130 | Ras-related protein RGP1 |
| trEMBL | tr|W1PWI7|W1PWI7_AMBTC | 1.00E-132 | Uncharacterized protein {ECO:0000313|EMBL:ERN11700.1} |
| TAIR | AT3G12160 | 1.00E-129 | RAB GTPase homolog A4D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1603015 | 1614236 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016653
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 17 | 177 | 4.40E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.880 |
| SRR2545915 | Juvenile tuber | 40.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 129.960 |
| SRR5643514 | five period of Gastrodia elata | 136.020 | |
| SRR5643515 | five period of Gastrodia elata | 171.820 | |
| SRR5643524 | five period of Gastrodia elata | 150.890 | |
| SRR5643525 | five period of Gastrodia elata | 249.700 | |
| SRR5643528 | five period of Gastrodia elata | 219.540 | |
| SRR5643658 | five period of Gastrodia elata | 182.020 | |
| SRR5643659 | five period of Gastrodia elata | 129.430 | |
| SRR5643660 | five period of Gastrodia elata | 129.280 | |
| SRR5643661 | five period of Gastrodia elata | 159.810 | |
| SRR5643662 | five period of Gastrodia elata | 155.560 | |
| SRR5643663 | five period of Gastrodia elata | 128.700 | |
| SRR5643664 | five period of Gastrodia elata | 145.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 96.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 129.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 106.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 69.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 85.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 88.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 86.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 127.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 135.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 159.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 159.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 95.03 |
| Juven | Juvenile tuber | 78.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 203.90 | |
| Mother_Juven | Mother tuber of Juvenile | 124.18 |