Detail information of GWHGAAEX016657/evm.TU.scaffold_78.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743862581|ref|XP_010943572.1| | 5.51E-153 | PREDICTED: transcription factor HBP-1b(c38)-like [Elaeis guineensis] |
| Swissprot | tr|Q39140|TGA6_ARATH | 2.00E-101 | Transcription factor TGA6 |
| trEMBL | tr|A0A061EYD6|A0A061EYD6_THECC | 5.00E-141 | BZIP transcription factor family protein {ECO:0000313|EMBL:EOY09442.1} |
| TAIR | AT5G06840 | 1.00E-117 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1666499 | 1671799 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016657
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 110 | 152 | 6.30E-09 |
| PF14144.5 | DOG1 | 197 | 270 | 2.10E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14431 | TGA | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.380 |
| SRR2545915 | Juvenile tuber | 5.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.980 |
| SRR5643514 | five period of Gastrodia elata | 5.510 | |
| SRR5643515 | five period of Gastrodia elata | 6.600 | |
| SRR5643524 | five period of Gastrodia elata | 7.180 | |
| SRR5643525 | five period of Gastrodia elata | 15.580 | |
| SRR5643528 | five period of Gastrodia elata | 5.960 | |
| SRR5643658 | five period of Gastrodia elata | 12.800 | |
| SRR5643659 | five period of Gastrodia elata | 1.580 | |
| SRR5643660 | five period of Gastrodia elata | 2.360 | |
| SRR5643661 | five period of Gastrodia elata | 2.950 | |
| SRR5643662 | five period of Gastrodia elata | 2.130 | |
| SRR5643663 | five period of Gastrodia elata | 1.150 | |
| SRR5643664 | five period of Gastrodia elata | 1.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.76 |
| Juven | Juvenile tuber | 11.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 67.91 | |
| Mother_Juven | Mother tuber of Juvenile | 51.85 |