Detail information of GWHGAAEX016661/evm.TU.scaffold_78.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12679.00E-22Mitochondrial transcription termination factor, mTERF
nrgi|672198160|ref|XP_008777253.1|7.07E-27PREDICTED: uncharacterized protein LOC103697212 isoform X4 [Phoenix dactylifera]
trEMBLtr|V4U7M9|V4U7M9_9ROSI6.00E-25Uncharacterized protein {ECO:0000313|EMBL:ESR61982.1}
TAIRAT4G196509.00E-22Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008616823011682606+
Transcript Sequence

Network for GWHGAAEX016661

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02536.13mTERF8985.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilymTERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.170
SRR2545915Juvenile tuber6.810
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata1.980
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata1.260
SRR5643525five period of Gastrodia elata3.870
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata2.650
SRR5643659five period of Gastrodia elata9.590
SRR5643660five period of Gastrodia elata5.910
SRR5643661five period of Gastrodia elata7.250
SRR5643662five period of Gastrodia elata4.750
SRR5643663five period of Gastrodia elata8.340
SRR5643664five period of Gastrodia elata8.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.840
SRR6049655Rhizomagastrodiae_C368-T10_good_12.830
SRR6049656Rhizomagastrodiae_C368-T07_good_17.020
SRR6049657Rhizomagastrodiae_C368-T07_good_19.650
SRR6049658Rhizomagastrodiae_C368-T04_good_110.680
SRR6049659Rhizomagastrodiae_C368-T04_good_110.300
SRR6049660Rhizomagastrodiae_C368-T01_good_16.250
SRR6049661Rhizomagastrodiae_C368-T04_good_15.480
SRR6049662Rhizomagastrodiae_C368-T01_good_14.970
SRR6049663Rhizomagastrodiae_C368-T01_good_15.660
SRR6049664Rhizomagastrodiae_C368-T10_good_13.240
SRR6049665Rhizomagastrodiae_C368-T10_good_13.240
SRP279888GastroGastrodia elata tuber 9.74
JuvenJuvenile tuber11.35
Mother_GastroMother tuber of Gastrodia elata 5.83
Mother_JuvenMother tuber of Juvenile 4.51