Detail information of GWHGAAEX016665/evm.TU.scaffold_78.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521462566|ref|YP_008149431.1| | 1.00E-31 | hypothetical protein SCE1572_14985 [Sorangium cellulosum So0157-2] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|743862360|ref|XP_010943513.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 7.2 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9LQL2|PTR14_ARATH | 0 | Protein NRT1/ PTR FAMILY 7.3 |
| trEMBL | tr|M0U1W9|M0U1W9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P20100_001} |
| TAIR | AT1G32450 | 0 | nitrate transporter 1.5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1725781 | 1728359 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016665
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 122 | 542 | 2.20E-96 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.090 |
| SRR5643514 | five period of Gastrodia elata | 0.070 | |
| SRR5643515 | five period of Gastrodia elata | 0.040 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 1.990 | |
| SRR5643528 | five period of Gastrodia elata | 1.020 | |
| SRR5643658 | five period of Gastrodia elata | 0.770 | |
| SRR5643659 | five period of Gastrodia elata | 0.040 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.040 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.41 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.59 |