Detail information of GWHGAAEX016667/evm.TU.scaffold_78.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434388059|ref|YP_007098670.1|1.00E-50leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
KOGKOG06190FOG: Leucine rich repeat
nrgi|743808806|ref|XP_010928429.1|0PREDICTED: plant intracellular Ras-group-related LRR protein 4-like [Elaeis guineensis]
Swissprottr|Q9SVW8|PIRL4_ARATH0Plant intracellular Ras-group-related LRR protein 4
trEMBLtr|M0T160|M0T160_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P23850_001}
TAIRAT4G354700plant intracellular ras group-related LRR 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008617308771733382-
Transcript Sequence

Network for GWHGAAEX016667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.5LRR_82292851.40E-08
PF13855.5LRR_82893314.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.360
SRR2545915Juvenile tuber5.820
SRP108465SRR5643513five period of Gastrodia elata12.780
SRR5643514five period of Gastrodia elata21.100
SRR5643515five period of Gastrodia elata13.920
SRR5643524five period of Gastrodia elata15.640
SRR5643525five period of Gastrodia elata3.410
SRR5643528five period of Gastrodia elata2.240
SRR5643658five period of Gastrodia elata5.190
SRR5643659five period of Gastrodia elata4.290
SRR5643660five period of Gastrodia elata5.060
SRR5643661five period of Gastrodia elata4.530
SRR5643662five period of Gastrodia elata4.660
SRR5643663five period of Gastrodia elata2.630
SRR5643664five period of Gastrodia elata3.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.020
SRR6049655Rhizomagastrodiae_C368-T10_good_132.530
SRR6049656Rhizomagastrodiae_C368-T07_good_130.950
SRR6049657Rhizomagastrodiae_C368-T07_good_115.700
SRR6049658Rhizomagastrodiae_C368-T04_good_128.660
SRR6049659Rhizomagastrodiae_C368-T04_good_126.420
SRR6049660Rhizomagastrodiae_C368-T01_good_113.160
SRR6049661Rhizomagastrodiae_C368-T04_good_117.350
SRR6049662Rhizomagastrodiae_C368-T01_good_148.230
SRR6049663Rhizomagastrodiae_C368-T01_good_131.840
SRR6049664Rhizomagastrodiae_C368-T10_good_171.070
SRR6049665Rhizomagastrodiae_C368-T10_good_171.070
SRP279888GastroGastrodia elata tuber 4.24
JuvenJuvenile tuber5.11
Mother_GastroMother tuber of Gastrodia elata 2.75
Mother_JuvenMother tuber of Juvenile 2.32