Gene detail

Detail information of GWHGAAEX016669/evm.TU.scaffold_78.98

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743821703\|ref\|XP_010932105.1\|	6.31E-122	PREDICTED: putative lysozyme-like protein [Elaeis guineensis]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	2.00E-15	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|M1H913\|M1H913_ELAGV	2.00E-114	Putative AT-hook DNA-binding protein {ECO:0000313\|EMBL:AGE46020.1}
TAIR	AT2G33620	2.00E-78	AT hook motif DNA-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	1754756	1758941	-

Transcript Sequence
>GWHTAAEX016669 GACTTGCTTTACCTGCCTTTTTCCTAATTTTAAATAAACCCCTTCGTAAGGCAGAGAGACTAAATTAAATAAAGTTTTAGGGGAAAAAATTCGAAGGATGTTTAGCAGAATTATTGCGGCGATTTTTCCCATTATCCTCTTCCTCCGTTTCCAGCTTTAGGCGCTCATCAATCCGCAGCTAGGGTTTTTTTCCGCATCTTTTCTCTCTTTTTTATCAATTTTTCGCTAATTATTTGGTCCTTTTCTCAGATTTTTCATAAATTTCTTGATTTTCTCGATTAAATTAGGGAAAAAAGAAGGAAATTTAGGAACTTTCCTCAGAATTTTCTTCCCCTCCCCCTCAGATCTGGCTAATTTCCGCATTTTAATTTCTGCCTGGAACATAAAACTTCGTTTTTATTTTATTTTATTTTTTCCGTGTTTTGGGGATTTTTATGAACTGAAGAAAATCATCAGCTGTTGCTCCATCAATTCTGCTGCTTCCTCTATTGCTGTAATCCGAAAACACAGCTCTTGCTTAGTGCAAAACCCCCAAACATTGCTTTTTCCCCTTTTAAAATTAGGAAAAAAGGTTGAAAATTAGGTGCTTTATTCAGAATTTTCCATTTTTTCTTCCCCTCAGATCTGGCTGCTAATTCCGCATTTTTATTTCTGCCTGGTGCATACAGCTTCAAAATTTTTTTTTCTGTATTTTTTGTGTTTTGGGGATTTTTATGAACTGAAGAAAATCATCAGTTGTTGCTCCATTAATTCTGCTGCTTCCTCTGTTGATGTAATCTGAAAACACAGCTCCTGCTTAGTGCAAAGTCCCCAAATCCAGCTTTTTCCCCTTTTAAAATTAGAAAAAAAGAAGACACTTTTGAAGGCATGGAAGTGAGATCCGAGCCCTCCTTCACTATGAGCATGCCTAAAAATCTGATAGTAAGCCAGCCTTCGATCTCTGGTATGCGGCTTACAGTGACTCCTGACGGCACGGCTGTTTACAAGCCAATCAGTCCAATTAGGAGCAGCTCGGCTTCAGCGTTTCAGGACGGCTCTTCTGGTACTTCTCCAGCCACTCTTCACGGCATAAATTTAGGAAGCTCCGGCGAACTTGTGAAGAAGAAAAGGGGGAGGCCGAGAAAGTACGGCCATGAAGGAAACATGGGCCTGGGACTCACTTCGATCTCCTCCCCTTCATCAGCTGTGGCTCCTCCGCCTGGATTCTCTCCTCTTCATCCAAAATCAGATCTTTCTGCTTCTGATCCTACTAAGAAGGCAAGGGGAAGGCCTCCGGGTTCTCTGAATAAGCAGAAGATGCTGTCACTTGGATCAGCAGGGACCGGGTTTACTCCACACGTGATTACTGTTAAAGCTGGAGAAGATGTATCGTCGAAGATCATGTCATTCTCGCAGCACGGATCGCGCGCAATCTGCGTTCTTTCGGCAAATGGGGCTATTTCTAATGTGACTCTTCGACAGGCGGCTACTTCTGGTGGGACTGTGACTTACGAGGGTCGGTTTGAAATATTATCATTGTCTGGATCATTTATGATATCGGATAACGGCGGGCAGCGCAGTCGTACCGGTGGCCTGAGTGTTTCTCTGGCGGGCCCTGATGGCCGTGTTCTCGGTGGTGGGGTCGCAGGCCTTCTCACCGCTGCATCTCCTGTCCAGGTTGTCGTTGGAAGCTTTGTTGCTGATGCAATTACAAAGGAGTTGAATCATATTAATCACTTCGACGGGTTAACAGGAGTGGGGAAATTGGCGGCTGGCGGCAACATTTACGGAGGCGGGGTGACGACCGGAGGAGGCAACAGTCCGCCTTCTCGAGGAACACTGAGCGGGTCATCTGGGGGGCCACCAAGCCCACTCAATCAAGGCATTGTGGCATGCAATAATAACAACCAACTGGGCATGCCAACCATTTCATGGAAATGAAAGGTAGCCATGATATAATATAGTTAACAACCATTGTTTTACTCTCTTGGCATCTTTAGGCTCTCCATTTGATGTAATTAGATTTACTTGTTGCAGTGTTGTGCGAGCAATTAATTAATTAGAGAGTGTGTGTGTGTGATGCTTAGTGTTGTTATTTAGTGTCTGTAGTGCTGTTTTAGGGTGGTATTTATGTTGTTTAAATATGCATTGATATCAAGCACTTGCTACTTTGATGTATCTATTCCCAATTTCAATATAAGTGGTAATTTACTATGATTTTATTCAATTGAGTCTCTTGTTTTATGTTATGCTGAGCAGTGGTAG

Network for GWHGAAEX016669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03479.14	DUF296	155	270	6.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	155.320
SRP064423	SRR2545915	Juvenile tuber	78.810
SRP108465	SRR5643513	five period of Gastrodia elata	109.720
	SRR5643514	five period of Gastrodia elata	114.890
	SRR5643515	five period of Gastrodia elata	109.000
	SRR5643524	five period of Gastrodia elata	112.060
	SRR5643525	five period of Gastrodia elata	124.500
	SRR5643528	five period of Gastrodia elata	93.970
	SRR5643658	five period of Gastrodia elata	140.560
	SRR5643659	five period of Gastrodia elata	88.750
	SRR5643660	five period of Gastrodia elata	85.930
	SRR5643661	five period of Gastrodia elata	81.400
	SRR5643662	five period of Gastrodia elata	109.830
	SRR5643663	five period of Gastrodia elata	88.660
	SRR5643664	five period of Gastrodia elata	134.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	124.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	90.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	107.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	151.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	146.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	158.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	134.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	124.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	79.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	95.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	99.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	99.090
SRP279888	Gastro	Gastrodia elata tuber	126.10
	Juven	Juvenile tuber	94.83
	Mother_Gastro	Mother tuber of Gastrodia elata	166.13
	Mother_Juven	Mother tuber of Juvenile	127.45