Detail information of GWHGAAEX016670/evm.TU.scaffold_78.100_evm.TU.scaffold_78.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4405 | 3.00E-142 | GDP dissociation inhibitor |
| nr | gi|743805514|ref|XP_010927462.1| | 0 | PREDICTED: rab proteins geranylgeranyltransferase component A 2 [Elaeis guineensis] |
| Swissprot | tr|O24653|GDI2_ARATH | 1.00E-25 | Guanosine nucleotide diphosphate dissociation inhibitor 2 |
| trEMBL | tr|M0UFX3|M0UFX3_HORVD | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_10591.1, ECO:0000313|EnsemblPlants:MLOC_10591.2} |
| TAIR | AT3G06540 | 3.00E-142 | Rab escort protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1819553 | 1867977 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016670
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00996.17 | GDI | 14 | 64 | 5.10E-07 |
| PF00996.17 | GDI | 88 | 453 | 3.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0007264 | Biological Process | small GTPase mediated signal transduction |
| GO:0018344 | Biological Process | protein geranylgeranylation |
| GO:0005092 | Molecular Function | GDP-dissociation inhibitor activity |
| GO:0005968 | Cellular Component | Rab-protein geranylgeranyltransferase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.050 |
| SRR2545915 | Juvenile tuber | 23.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.760 |
| SRR5643514 | five period of Gastrodia elata | 26.020 | |
| SRR5643515 | five period of Gastrodia elata | 23.980 | |
| SRR5643524 | five period of Gastrodia elata | 27.660 | |
| SRR5643525 | five period of Gastrodia elata | 36.640 | |
| SRR5643528 | five period of Gastrodia elata | 37.270 | |
| SRR5643658 | five period of Gastrodia elata | 35.600 | |
| SRR5643659 | five period of Gastrodia elata | 23.170 | |
| SRR5643660 | five period of Gastrodia elata | 27.640 | |
| SRR5643661 | five period of Gastrodia elata | 25.930 | |
| SRR5643662 | five period of Gastrodia elata | 26.450 | |
| SRR5643663 | five period of Gastrodia elata | 25.700 | |
| SRR5643664 | five period of Gastrodia elata | 32.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.38 |
| Juven | Juvenile tuber | 32.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.93 | |
| Mother_Juven | Mother tuber of Juvenile | 35.76 |