Detail information of GWHGAAEX016675/evm.TU.scaffold_78.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|183221730|ref|YP_001839726.1| | 4.00E-137 | thioredoxin reductase 1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| KOG | KOG0404 | 0 | Thioredoxin reductase |
| nr | gi|743821878|ref|XP_010932150.1| | 0 | PREDICTED: thioredoxin reductase NTRB [Elaeis guineensis] |
| Swissprot | tr|Q6ZFU6|NTRB_ORYSJ | 0 | Thioredoxin reductase NTRB |
| trEMBL | tr|A9YZV9|A9YZV9_HORVD | 0 | Thioredoxin reductase {ECO:0000256|RuleBase:RU003881} |
| TAIR | AT2G17420 | 0 | NADPH-dependent thioredoxin reductase A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1927153 | 1930670 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016675
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07992.13 | Pyr_redox_2 | 43 | 340 | 1.40E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00384 | trxB, TRR | Selenocompound metabolism | map00450 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019430 | Biological Process | removal of superoxide radicals |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004791 | Molecular Function | thioredoxin-disulfide reductase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.950 |
| SRR2545915 | Juvenile tuber | 30.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.960 |
| SRR5643514 | five period of Gastrodia elata | 60.880 | |
| SRR5643515 | five period of Gastrodia elata | 52.500 | |
| SRR5643524 | five period of Gastrodia elata | 57.620 | |
| SRR5643525 | five period of Gastrodia elata | 48.780 | |
| SRR5643528 | five period of Gastrodia elata | 55.740 | |
| SRR5643658 | five period of Gastrodia elata | 54.580 | |
| SRR5643659 | five period of Gastrodia elata | 56.180 | |
| SRR5643660 | five period of Gastrodia elata | 57.700 | |
| SRR5643661 | five period of Gastrodia elata | 57.780 | |
| SRR5643662 | five period of Gastrodia elata | 56.990 | |
| SRR5643663 | five period of Gastrodia elata | 50.650 | |
| SRR5643664 | five period of Gastrodia elata | 47.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 66.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 78.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 70.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 58.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 75.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 91.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 91.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 59.64 |
| Juven | Juvenile tuber | 72.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 63.18 | |
| Mother_Juven | Mother tuber of Juvenile | 57.40 |