Detail information of GWHGAAEX016677/evm.TU.scaffold_78.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2202 | 6.00E-136 | U2 snRNP splicing factor, small subunit, and related proteins |
| nr | gi|695072223|ref|XP_009383223.1| | 1.59E-159 | PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FMY5|U2AFB_ARATH | 2.00E-136 | Splicing factor U2af small subunit B |
| trEMBL | tr|M0TZP3|M0TZP3_MUSAM | 7.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P12340_001} |
| TAIR | AT5G42820 | 6.00E-136 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 1955150 | 1957224 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016677
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 14 | 38 | 2.50E-07 |
| PF00076.21 | RRM_1 | 83 | 139 | 5.60E-08 |
| PF00642.23 | zf-CCCH | 150 | 174 | 6.90E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12836 | U2AF1 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0089701 | Cellular Component | U2AF |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 148.640 |
| SRR2545915 | Juvenile tuber | 101.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 84.110 |
| SRR5643514 | five period of Gastrodia elata | 49.060 | |
| SRR5643515 | five period of Gastrodia elata | 53.600 | |
| SRR5643524 | five period of Gastrodia elata | 54.140 | |
| SRR5643525 | five period of Gastrodia elata | 118.480 | |
| SRR5643528 | five period of Gastrodia elata | 86.140 | |
| SRR5643658 | five period of Gastrodia elata | 142.770 | |
| SRR5643659 | five period of Gastrodia elata | 91.870 | |
| SRR5643660 | five period of Gastrodia elata | 122.540 | |
| SRR5643661 | five period of Gastrodia elata | 97.840 | |
| SRR5643662 | five period of Gastrodia elata | 122.990 | |
| SRR5643663 | five period of Gastrodia elata | 102.270 | |
| SRR5643664 | five period of Gastrodia elata | 133.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 78.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 71.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 96.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 102.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 108.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 97.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 94.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 80.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 112.72 |
| Juven | Juvenile tuber | 73.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.55 | |
| Mother_Juven | Mother tuber of Juvenile | 57.98 |