Gene detail

Detail information of GWHGAAEX016680/evm.TU.scaffold_78.111

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672122884\|ref\|XP_008784787.1\|	PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Phoenix dactylifera]
Swissprot	tr\|Q9S9Q9\|Y1044_ARATH	BTB/POZ domain-containing protein At1g30440
trEMBL	tr\|B9SKU3\|B9SKU3_RICCO	Root phototropism protein, putative {ECO:0000313\|EMBL:EEF35771.1}
TAIR	AT1G30440	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	1973191	1987765	-

Transcript Sequence
>GWHTAAEX016680 GTTGGTTTTGCTTCCTACGAACCTCCTTCTTGATGTTTATCGTATAAACAATCCGGCAACATTGTGTAAGTTTTTATAATATGATAATACTCCAAATGAAGAGACGTGAATACTTCGGTTCTCCTTCTGAGATGCTCCTTTTTAATCCATCTTTCATCATTTTTCCATCTTATTTAACTCTGCTCTGCTCTTGAACTATCGCTTCTGTCTTTTACCGCGGATCCGAGGCTTCAAGATGGCTTGCGTGAAGCTGGGATCAAAATCTGATGCTTTCCACCGTCAAGGGCAGGCATGGTTTTGTACGAGTGGTCTTCCCAGCGATGTTACAGTTGAAGTTGGGGAAATGCTTTTTCACCTTCACAAGTTCCCGCTGCTATCAAAGAGCATTCTTCTTGAAAAGCTGATTTCCGAGCAGCCAGAAGAGGGCGAAATTTGTTTAGTTAAGCTTCCCGTTGTTCCAGGTGCCTCGAAAGCATTCGAGCTAGTTGCCAAGTTTTGCTATGGTGTGAAGCTAGAGCTAACTGCTTCAAATGTAGTGTGCCTCCGCTGTGCTGCAGAGTACCTGCAAATGACTGAGGAAGTGGCTGAGGGGAACTTGATCTCGCAGACTGAAACTTTCATAAATCAGGTCGTCCTTCGCAGCTGGAAGGATTCCTTGAAAGCCCTCCAGGCCTGCGACGATCTTCTTCCTTGTGCCGAAGATCTTAACATTGTGAAACGATGCATCGAGTCTTTAGCCATCATGGCGTTTAAGGATCCTAATCTGTTTGGTTTGCCGATGATGGAGCGTGGTTCCATGCGAAGTCCTGGTGGGAGTGTCCTTTGGAATGGGATAAGCACTGGGGTTAGACCCCGAGAAGTTAGCTCTGATTGGTGGTATGAAGATGTCTCATCTTTGAGCCTTCCTATGTATAAAAGGCTGATAGCTGTAATGGAATCCCGGGGTATCAAGATCGATGCCATTGCTGGCTCGCTTGCCTCCTATGCAAAAAGGCACATTCATGGGTTAAACAAGAGGCAGAACACCGCGACTTCAGCTTCTGTGTTGTCTGAGGAGGAACAGAGGAATCTTCTCGAAGAGATCGACAGATTACTGCCTTTTCAGAGGGGCGCGACATCAACCAAATTTCTCTGCAACCTTCTCCGCTGTGCTTTGATTCTAAAGGCGAGCTCTTCGTGTGTATCTAACATGGAAAGTAGAATAGGGATGCAGCTCGATGAAGCCTCTTTGGAAGATTTACTAATGCCTACATTTTCGTATTCGATGGAAACGCTATACGATGTTGATTGCGTCCAAAGAATCTTAGAACACTTCCTGACTCTGGATCAGGCCGCGGTCGGCGCTTCTCCGGGTCTCGCAGACGACGAACAATTGATCGGATCTCTTTCCCTAACGCCGATAACTGCTGTGGCTAAGCTCATAGACGGGTATCTGGCTGAGGTTGCACCTGATGCCAACTTGAAGCTGCCAAAATTTCAATCGCTTGCAGCCGCAGTGCCGGAATACGCGCGCCCCCTGGATGATGGTCTTTACCGCGCAATCGATATTTTCTTAAAGGCGCACCCATGGATCTCGGAATCAGAGCGAGAGCAGCTTTGTCGGCTAATGGACTGCCAGAAGCTCTCTCTGGAAGCATGCACCCATGCCGCACAAAATGAGAGGCTTCCTCTCCGGATCATAATCCAGGTTCTCTTCTTCGAGCAACTTCAGCTCAGAACCTCAATCGCTGGATGCTTCCTCGTCTCGGACAACCTTGACGGATCTCGAGTTCTGAGGAGCGGCCTCGTGGGACCGAGCGAGGGCGGTGGATGGGCGAATTCGGTGAGGGAAAACCAAGTCCTGAAGGTCGGAATGGATCACATGAGGAATAGGGTCTCTGAGCTGGAGAAAGAGTGCTCCACTATGAGGCAGGAGATCGAGAGATTAGGGCGCGGACGGTGGAGCGCCTCTCCTAAGAAGTTCGGATTCAAGCTGAACCTGCAGATTTGCAGCGCGAAGGATGATTCGATTAATGAGAATCCATTGGAGACGAGCTCGAAGATCGGGAGGCTTCAGGCTAAGATTTCGAAGCATAGGCAGCAGGGCTTGTCTGTCGACAAGTAAGCCTCTTCTCTTTTCTTTATTATTAGCTCTATTCTTCGTGTATGTTTATATGCATTGAATTGAGCATTTCATTCTTAGTTCTAATTTGGAAATGAAAGATAAGAACCTGTCTTTGATGTATTCATTCTTTTTCTTAGTTCTCCTTGTTTTTGTATTAGTTTTTAATCAAAGAAAGCGTGTCTTTACAATTTGTTGTGATGCTTCCCTTTGGAAATTTTGTGTCTTAGTTATGAAGATGTTATGTGTTGGTTGAGGCTTTCATATGTATGTGCC

Network for GWHGAAEX016680

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	26	114	5.00E-07
PF03000.13	NPH3	212	468	4.80E-95

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.920
SRP064423	SRR2545915	Juvenile tuber	13.170
SRP108465	SRR5643513	five period of Gastrodia elata	28.210
	SRR5643514	five period of Gastrodia elata	29.050
	SRR5643515	five period of Gastrodia elata	22.360
	SRR5643524	five period of Gastrodia elata	28.660
	SRR5643525	five period of Gastrodia elata	32.490
	SRR5643528	five period of Gastrodia elata	31.710
	SRR5643658	five period of Gastrodia elata	35.560
	SRR5643659	five period of Gastrodia elata	14.910
	SRR5643660	five period of Gastrodia elata	15.450
	SRR5643661	five period of Gastrodia elata	12.860
	SRR5643662	five period of Gastrodia elata	15.580
	SRR5643663	five period of Gastrodia elata	14.760
	SRR5643664	five period of Gastrodia elata	18.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.460
SRP279888	Gastro	Gastrodia elata tuber	13.77
	Juven	Juvenile tuber	20.35
	Mother_Gastro	Mother tuber of Gastrodia elata	47.13
	Mother_Juven	Mother tuber of Juvenile	26.79