Gene detail

Detail information of GWHGAAEX016681/evm.TU.scaffold_78.113

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2992	9.00E-25	Nucleolar GTPase/ATPase p130
nr	gi\|297735451\|emb\|CBI17891.3\|	6.77E-41	unnamed protein product [Vitis vinifera]
trEMBL	tr\|V4UJW9\|V4UJW9_9ROSI	9.00E-41	Uncharacterized protein {ECO:0000313\|EMBL:ESR66462.1}
TAIR	AT5G57120	9.00E-25	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	1997438	2029928	+

Transcript Sequence
>GWHTAAEX016681 GAAGAGTACAATTTTGCCCACTAGTTAAAAACCCTACACGGCCTCCGTTTCATCGCGCCGCAGCGCCGCATGACGGAAGCTTTCAGCCGCAAAACCTTGGCCTCCTTAATCCCTCGTCAGATTATGCTCGGAACCGCCTTCTCTAAGGAGGACAGTATAAAGGAAAGCAAGGGCAAGAAGATGGATGAAACAATGGCAGTAATGGGAATCGAGGACATGGAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAACAGTTCGTTCAAGATGTCCAACACCGTTGGAATGTGCCCCGAGCTGGCGGATACCCGGGCGATCGATTACCCGAATGGCGATGTTCTGCCATGGAAAGGAAACGGGCGCGATGACTTGCTCAGATCCATAGACGCGTTTCTCGAAAGCAGCGGTTTCGTCAAGACGCTATCCGTCTTTCGCTCGGAGGCCCAGATCGAGGTTACCAAAAGAGGTTCTTTTATTAACTTGGAGGATTTATTTGAAAAGTCTAGCTGGCCAAGTAAAAGGGACTCAGTTGCTAACATTGAGTGGTCAAAAGAACAAGATACCGGAAAACTCATTCCAGAAGTTACTGATGATTTAGATGTCAAAACTAAAAAAAAAAAGAGAAAAGTTAAGGAAGCCTTTGGTTCCTCTGAACTGGAAAATGCTGAAAAAAACCATTTGGGTGCTGCCCTTTTGACCACTCAGTTGAGCAGAAAGTTGATGAAAAAGGAAAAGCATTCTGGTGAGGATGAATCAGGACCTAGGTCAGGTGCAAAGGCACAAGAAGTTCTGGGCCAAGTTAGAGGAAGTAAAAGGGACTTAGTTGCCAACATTGAGTGGACAAAAGAACGAGACGCTGTTGATGATTCAGATGTCAAAACTAAAGATAAAAAGAGAAAAATTAATCAAGTATTTGGTTCCTTTGAACTGGGAAATGCAAAAAAAAGTTCAATGGGAGCTCCTCTTAGACCAGAAGATTCTGATTTTCAAATTTTTTTGGTAAATAAAGACACTGCTCTAGATGAAAAAGATGCTTCTAAAGAGAATTTCGATGAACTGAAGAATTTGAATAATAACCCTATCATAGGAATTGACAGTGCTGTTATAAATAAAAGTGGGAAGAATAGGAAGAAAAAGGAAGCTAAACAACCTCTTGAACAGTTTAGACAGGGTGGCAGTCAGGAAGCCTTCGCCAAGGAACCTGATGATGGAAAGAGTTTTGCTTCTACCAAACACCAGGAATCAGTGAACTCTGATAACATGGCCAATGAATTTCACAAAAATGTTGGAAATTTTAAAAAAGCTAAGAGAAAAACTAAGAAGAAAATGGAAGAGGTGACAACTGCATACAGTCTGCATACTGATAGTTCTGATAAACTTGTTGATGAAACATGTGGTGGAGTAGAAAAGCTTGATAATGGCAGTTTGCAGAAAATTGACATTGTAAAGGACAGTATTGCAGTATCTAAAGAGAATGCTTCTGATGGTGAAGCTACAACCAACAACAAGAAGAAGAGGTCCTCAACTAAGGAAACAGAAAAACACTTTGAGATTACAGCTAGCAATTCAAAACATGCCAAGTTAGAAGTTACTAAAGGGGAAAAAGTAATTACGGATCAGAAAATTTTGTATTGCAACGAATCTTTACCTCTCAAACAGAAATCCAATGAACCTTCCAAGGAGTTGTTCATTTGTCTAGATAAGCATGAAGAAAATTCTGCTTTACAGGATTCACTAGAACAATTGAACGGATTTCATTCTGGTAATGTGATTATTGAGAAGCATGCAAACGAGGGAAGCGCCATGCCAAATTCAATGAAAAAGGAAAGGCATTCTGGTGAGCAAAGAGGGTTAAATGCATTTCAGAGAGTTAAAGTTGATGAAATCAAGTTTGCAGATGAGAGATTGCAAGACAACTCTTATTGGGCTCTGGATGAAACAGGATCTGGGTATGGTGCAAAGGCTCAAGAAGTTCTTGGACAAGTTAGAGGAAGGAACTTCAGGCACGAGAAAACCAAGAAAAAGCGCGGGACGTACAGAGGAGGGCAGATAGATTTAGAGTCCCACTCCATAAAATTCAACTATTCAGATGACGACTGATCAAATCTTACCTTTTTATTGATTAAAATAAATATTCAATTCGAGAACGATAAATATAAACTAAGTTATTTGGCCCCAAAAAGTTGGATAATTAGTATTTGCATTTCAAATATGTTCTTTAGCAAAAGTTGATTTAATGCTGTTTTTGTGTAAGAAATAAGTTATTTTATACCTATATTTTGGTGGTATTTGTGTAATACTTAAGATTTAGATGGTAGATAGGTAAATAGCCAAAAAGCCATGTATGAACTTCGATAAATATTGTGAATGAATTTTAATTTTAAGACA

Network for GWHGAAEX016681

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05022.11	SRP40_C	597	669	2.80E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	196.670
SRP064423	SRR2545915	Juvenile tuber	166.340
SRP108465	SRR5643513	five period of Gastrodia elata	104.960
	SRR5643514	five period of Gastrodia elata	81.740
	SRR5643515	five period of Gastrodia elata	80.980
	SRR5643524	five period of Gastrodia elata	72.960
	SRR5643525	five period of Gastrodia elata	76.600
	SRR5643528	five period of Gastrodia elata	78.820
	SRR5643658	five period of Gastrodia elata	71.780
	SRR5643659	five period of Gastrodia elata	89.100
	SRR5643660	five period of Gastrodia elata	93.970
	SRR5643661	five period of Gastrodia elata	88.070
	SRR5643662	five period of Gastrodia elata	77.520
	SRR5643663	five period of Gastrodia elata	78.380
	SRR5643664	five period of Gastrodia elata	84.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	102.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	117.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	96.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	120.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	123.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	136.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	111.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	112.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	79.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	102.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	93.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	93.930
SRP279888	Gastro	Gastrodia elata tuber	73.58
	Juven	Juvenile tuber	117.18
	Mother_Gastro	Mother tuber of Gastrodia elata	45.77
	Mother_Juven	Mother tuber of Juvenile	80.51