Gene detail

Detail information of GWHGAAEX016682/evm.TU.scaffold_78.115

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672122886\|ref\|XP_008784788.1\|	8.91E-102	PREDICTED: single myb histone 6-like [Phoenix dactylifera]
Swissprot	tr\|Q8VWK4\|TRB1_ARATH	2.00E-84	Telomere repeat-binding factor 1
trEMBL	tr\|W1P659\|W1P659_AMBTC	2.00E-98	Uncharacterized protein {ECO:0000313\|EMBL:ERN05352.1}
TAIR	AT1G49950	1.00E-83	telomere repeat binding factor 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	2031221	2047005	+

Transcript Sequence
>GWHTAAEX016682 CCCTAGCCGCCCTCAGAGCCGTAATACTAATTTTAATTGTTTGTCCTTTTCTTACATTAACCTCAGTTTGAGCTATCGTCGCGGCAGCCGTCATTTTCTTAGTAGTTAGGGCTTTATAATGGTTCGAAGGCCGAATTAAACCCTTCGGATCTTGATACGCAATCTCCCGAATGCCGAAGCGAACCCTTCTCCTTCGTTTTTCCGCCTTCGGTTCTTGAAGTTTTCTTAGGCCGAAGCTCCAGCCCTGCTTTTCAGGCCTCACCGTCGCTGCCTTAGCCATCGGGATCCCGTCCCGCCGTCCGGCCGTCCCGAAGCGGCGAAGCCAATCCTTTGATCCGCGACTGAGATTTAAGGATTGTTCAACTTCCTCTGGGACGCTATATTATCAATGGGTGCTCCAAAGCAGAAATGGACATCAGAGGAGGAATCAGCTCTCAAAGCTGGAGTTGTTAAGCATGGAGCTGGGAAATGGCGCACAATATTAAAAGACCCAGAATTTAGTAGTGTTTTATCTTTACGTTCTAATGTTGATCTCAAGGACAAATGGCGAAATATGAGTGTCACAGCTAATGGATGGGGTTCTAGAGAGAAGGCTAGGGTTGCCCTAAAGAAGAGCCGTCCAATTTCTAAATTAGAAGAGGCTCCTTTGACCCTAAGTACAGTTGATGATCGCCAGGATGAGATCGATGAAGCTAAACCTCTTGCTTTATTAAGTCCGCTTCCACTGCTTACTGCTCCTAGAAAATTGGTATCAAAGATAGACAATCTTATATTTGAAGCCATAACTAACTTGAAGGAGCCCAGTGGGTCCAATAAGACTGCCATCACATTGTATATAGAGGATCAATACTCTGCCCCATCAAATTTAAAGAAATTGTTATCTATTAAGCTTAAGGCTTTGACTGCAAGCGGGAAATTATCCAAGGTTAAACGCAGATACAGAATACCTCAAGGCTCAACAATATCAGATCAAAGAAACCCAAAACCCAAGGTTCTACTTCTTGAGGGAAGACAACAAAAGGAACCTTTGAAAGGCGGTGGGGTAGATAAGAAGGATGTTAAATTGCTCACAAAGCCTCAAATAGATGCCGAGTTAGCACGAATGAGAACCATGTCGGCAGAGGAAGCAGCCATAGCCGCTGCCCAAGCAGTCGCTGAAGCCGAGGAAGTGATGACAGAGGCAGAAGAGGCCGCCAGAGAAGCAGAGGCCGCAGAAGCCGACGCCGAGGCGGCAGAGGCTTTTGCTGAAGCCGCTCAAAAGACTCTTCGCAAAAGAGCCAAGTCGAATTTTCAATTTTGACAAAAGGACCTTTCGGCAATACTGCAAAGCCTGGAGACAATTCTGTTCTGTTACTTTGTACATATATATGCAGTGCAGGGTTTGTACATCTTTCACATATTGCTACTTCTTCATATTAGTTTTATATTAAATATGCACTTAGCCTTCATTCTTTTCTTAATTGTCATAAAATTTTTTAATATCTTATTAATTGCTGTGAAAACTAAGCTCTTCTAAAGGCGGTTGTTACACTAGGCTCCTTAATTTTTTTTTTGTGGA

Network for GWHGAAEX016682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	5	55	1.60E-07
PF00538.18	Linker_histone	124	181	7.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	Biological Process	nucleosome assembly
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus
GO:0000786	Cellular Component	nucleosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.680
SRP064423	SRR2545915	Juvenile tuber	53.530
SRP108465	SRR5643513	five period of Gastrodia elata	55.470
	SRR5643514	five period of Gastrodia elata	63.910
	SRR5643515	five period of Gastrodia elata	53.080
	SRR5643524	five period of Gastrodia elata	63.130
	SRR5643525	five period of Gastrodia elata	60.290
	SRR5643528	five period of Gastrodia elata	51.530
	SRR5643658	five period of Gastrodia elata	64.130
	SRR5643659	five period of Gastrodia elata	53.640
	SRR5643660	five period of Gastrodia elata	54.760
	SRR5643661	five period of Gastrodia elata	48.310
	SRR5643662	five period of Gastrodia elata	57.930
	SRR5643663	five period of Gastrodia elata	66.330
	SRR5643664	five period of Gastrodia elata	66.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	72.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	63.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.770
SRP279888	Gastro	Gastrodia elata tuber	83.44
	Juven	Juvenile tuber	73.46
	Mother_Gastro	Mother tuber of Gastrodia elata	81.31
	Mother_Juven	Mother tuber of Juvenile	61.07