Detail information of GWHGAAEX016684/evm.TU.scaffold_78.117


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|148655047|ref|YP_001275252.1|1.00E-19WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
KOGKOG29192.00E-132Guanine nucleotide-binding protein
nrgi|672133167|ref|XP_008790192.1|0PREDICTED: telomerase Cajal body protein 1 [Phoenix dactylifera]
Swissprottr|Q8H0T9|KTNB1_ARATH4.00E-10Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|M0S6B7|M0S6B7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P08760_001}
TAIRAT4G215202.00E-132Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008620714932105812-
Transcript Sequence

Network for GWHGAAEX016684

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD40761030.008
PF00400.31WD401892160.14
PF00400.31WD402733110.00012
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.300
SRR2545915Juvenile tuber16.790
SRP108465SRR5643513five period of Gastrodia elata8.310
SRR5643514five period of Gastrodia elata9.880
SRR5643515five period of Gastrodia elata7.130
SRR5643524five period of Gastrodia elata9.100
SRR5643525five period of Gastrodia elata2.040
SRR5643528five period of Gastrodia elata1.450
SRR5643658five period of Gastrodia elata2.090
SRR5643659five period of Gastrodia elata4.220
SRR5643660five period of Gastrodia elata5.240
SRR5643661five period of Gastrodia elata4.980
SRR5643662five period of Gastrodia elata2.510
SRR5643663five period of Gastrodia elata3.740
SRR5643664five period of Gastrodia elata3.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.270
SRR6049655Rhizomagastrodiae_C368-T10_good_111.060
SRR6049656Rhizomagastrodiae_C368-T07_good_115.220
SRR6049657Rhizomagastrodiae_C368-T07_good_112.140
SRR6049658Rhizomagastrodiae_C368-T04_good_117.200
SRR6049659Rhizomagastrodiae_C368-T04_good_111.280
SRR6049660Rhizomagastrodiae_C368-T01_good_113.060
SRR6049661Rhizomagastrodiae_C368-T04_good_114.810
SRR6049662Rhizomagastrodiae_C368-T01_good_115.280
SRR6049663Rhizomagastrodiae_C368-T01_good_114.840
SRR6049664Rhizomagastrodiae_C368-T10_good_110.360
SRR6049665Rhizomagastrodiae_C368-T10_good_110.360
SRP279888GastroGastrodia elata tuber 12.75
JuvenJuvenile tuber10.49
Mother_GastroMother tuber of Gastrodia elata 7.61
Mother_JuvenMother tuber of Juvenile 6.04