Detail information of GWHGAAEX016685/evm.TU.scaffold_78.118
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384147085|ref|YP_005529901.1| | 1.00E-57 | urate oxidase [Amycolatopsis mediterranei S699] |
| KOG | KOG1599 | 8.00E-162 | Uricase (urate oxidase) |
| nr | gi|11414898|dbj|BAB18538.1| | 2.60E-162 | uricase [Lotus japonicus] |
| Swissprot | tr|O04420|URIC_ARATH | 2.00E-162 | Uricase |
| trEMBL | tr|Q9FRY6|Q9FRY6_LOTJA | 1.00E-162 | Uricase {ECO:0000256|PIRNR:PIRNR000241, ECO:0000256|RuleBase:RU004455} |
| TAIR | AT2G26230 | 8.00E-162 | uricase / urate oxidase / nodulin 35, putative |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 2108776 | 2131684 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016685
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01014.17 | Uricase | 10 | 136 | 1.60E-19 |
| PF01014.17 | Uricase | 148 | 297 | 7.10E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00365 | uaZ | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 | ||
| Caffeine metabolism | map00232 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006144 | Biological Process | purine nucleobase metabolic process |
| GO:0004846 | Molecular Function | urate oxidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.690 |
| SRR2545915 | Juvenile tuber | 43.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.950 |
| SRR5643514 | five period of Gastrodia elata | 55.180 | |
| SRR5643515 | five period of Gastrodia elata | 53.090 | |
| SRR5643524 | five period of Gastrodia elata | 55.340 | |
| SRR5643525 | five period of Gastrodia elata | 48.320 | |
| SRR5643528 | five period of Gastrodia elata | 61.450 | |
| SRR5643658 | five period of Gastrodia elata | 47.930 | |
| SRR5643659 | five period of Gastrodia elata | 31.660 | |
| SRR5643660 | five period of Gastrodia elata | 28.470 | |
| SRR5643661 | five period of Gastrodia elata | 27.750 | |
| SRR5643662 | five period of Gastrodia elata | 23.300 | |
| SRR5643663 | five period of Gastrodia elata | 25.710 | |
| SRR5643664 | five period of Gastrodia elata | 21.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 61.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 73.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 71.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 54.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 56.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 64.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 62.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.09 |
| Juven | Juvenile tuber | 47.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 96.41 | |
| Mother_Juven | Mother tuber of Juvenile | 73.87 |