Detail information of GWHGAAEX016695/evm.TU.scaffold_78.129


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|78485447|ref|YP_391372.1|1.00E-10excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2]
KOGKOG30051.00E-38GIY-YIG type nuclease
nrgi|672172904|ref|XP_008806563.1|1.29E-48PREDICTED: structure-specific endonuclease subunit SLX1 homolog isoform X1 [Phoenix dactylifera]
trEMBLtr|W5DUS1|W5DUS1_WHEAT3.00E-47Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4AL_E729F0E09.2}
TAIRAT5G432101.00E-38Excinuclease ABC, C subunit, N-terminal

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008622191892229347+
Transcript Sequence

Network for GWHGAAEX016695

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01541.23GIY-YIG1781.80E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15078SLX1 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.210
SRR2545915Juvenile tuber15.630
SRP108465SRR5643513five period of Gastrodia elata14.880
SRR5643514five period of Gastrodia elata19.020
SRR5643515five period of Gastrodia elata16.080
SRR5643524five period of Gastrodia elata20.290
SRR5643525five period of Gastrodia elata36.830
SRR5643528five period of Gastrodia elata34.840
SRR5643658five period of Gastrodia elata40.810
SRR5643659five period of Gastrodia elata13.490
SRR5643660five period of Gastrodia elata11.730
SRR5643661five period of Gastrodia elata13.760
SRR5643662five period of Gastrodia elata14.430
SRR5643663five period of Gastrodia elata15.850
SRR5643664five period of Gastrodia elata11.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.140
SRR6049655Rhizomagastrodiae_C368-T10_good_15.580
SRR6049656Rhizomagastrodiae_C368-T07_good_112.040
SRR6049657Rhizomagastrodiae_C368-T07_good_110.950
SRR6049658Rhizomagastrodiae_C368-T04_good_16.970
SRR6049659Rhizomagastrodiae_C368-T04_good_110.320
SRR6049660Rhizomagastrodiae_C368-T01_good_110.700
SRR6049661Rhizomagastrodiae_C368-T04_good_18.130
SRR6049662Rhizomagastrodiae_C368-T01_good_19.630
SRR6049663Rhizomagastrodiae_C368-T01_good_110.350
SRR6049664Rhizomagastrodiae_C368-T10_good_112.710
SRR6049665Rhizomagastrodiae_C368-T10_good_112.710
SRP279888GastroGastrodia elata tuber 12.73
JuvenJuvenile tuber12.67
Mother_GastroMother tuber of Gastrodia elata 40.21
Mother_JuvenMother tuber of Juvenile 22.99