Detail information of GWHGAAEX016696/evm.TU.scaffold_78.130


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|320159739|ref|YP_004172963.1|02-isopropylmalate synthase [Anaerolinea thermophila UNI-1]
KOGKOG00590Lipid exporter ABCA1 and related proteins, ABC superfamily
nrgi|743786366|ref|XP_010922154.1|0PREDICTED: ABC transporter A family member 1 [Elaeis guineensis]
Swissprottr|Q84M24|AB1A_ARATH0ABC transporter A family member 1
trEMBLtr|B9H9T2|B9H9T2_POPTR0ABC transporter family protein {ECO:0000313|EMBL:EEE92460.2}
TAIRAT2G417000ATP-binding cassette A1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008622498592495488+
Transcript Sequence

Network for GWHGAAEX016696

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12698.6ABC2_membrane_31844821.00E-22
PF00005.26ABC_tran5827231.10E-27
PF12698.6ABC2_membrane_399013921.50E-39
PF00005.26ABC_tran148616283.40E-26
PF00682.18HMGL-like193522131.30E-86
PF08502.9LeuA_dimer231324587.20E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05643ABCA3 ABC transporters map02010

Gene Ontology

GO term OntologyName
GO:0009098Biological Processleucine biosynthetic process
GO:0019752Biological Processcarboxylic acid metabolic process
GO:0003852Molecular Function2-isopropylmalate synthase activity
GO:0046912Molecular Functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0016887Molecular FunctionATPase activity
GO:0005524Molecular FunctionATP binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms71.440
SRR2545915Juvenile tuber107.310
SRP108465SRR5643513five period of Gastrodia elata24.100
SRR5643514five period of Gastrodia elata21.470
SRR5643515five period of Gastrodia elata22.930
SRR5643524five period of Gastrodia elata21.890
SRR5643525five period of Gastrodia elata36.890
SRR5643528five period of Gastrodia elata28.570
SRR5643658five period of Gastrodia elata38.320
SRR5643659five period of Gastrodia elata33.600
SRR5643660five period of Gastrodia elata39.600
SRR5643661five period of Gastrodia elata30.870
SRR5643662five period of Gastrodia elata31.760
SRR5643663five period of Gastrodia elata40.030
SRR5643664five period of Gastrodia elata40.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.680
SRR6049655Rhizomagastrodiae_C368-T10_good_122.570
SRR6049656Rhizomagastrodiae_C368-T07_good_131.020
SRR6049657Rhizomagastrodiae_C368-T07_good_138.840
SRR6049658Rhizomagastrodiae_C368-T04_good_146.960
SRR6049659Rhizomagastrodiae_C368-T04_good_153.610
SRR6049660Rhizomagastrodiae_C368-T01_good_134.740
SRR6049661Rhizomagastrodiae_C368-T04_good_146.690
SRR6049662Rhizomagastrodiae_C368-T01_good_128.670
SRR6049663Rhizomagastrodiae_C368-T01_good_130.240
SRR6049664Rhizomagastrodiae_C368-T10_good_125.200
SRR6049665Rhizomagastrodiae_C368-T10_good_125.200
SRP279888GastroGastrodia elata tuber 42.84
JuvenJuvenile tuber26.79
Mother_GastroMother tuber of Gastrodia elata 32.46
Mother_JuvenMother tuber of Juvenile 33.39