Detail information of GWHGAAEX016696/evm.TU.scaffold_78.130
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320159739|ref|YP_004172963.1| | 0 | 2-isopropylmalate synthase [Anaerolinea thermophila UNI-1] |
| KOG | KOG0059 | 0 | Lipid exporter ABCA1 and related proteins, ABC superfamily |
| nr | gi|743786366|ref|XP_010922154.1| | 0 | PREDICTED: ABC transporter A family member 1 [Elaeis guineensis] |
| Swissprot | tr|Q84M24|AB1A_ARATH | 0 | ABC transporter A family member 1 |
| trEMBL | tr|B9H9T2|B9H9T2_POPTR | 0 | ABC transporter family protein {ECO:0000313|EMBL:EEE92460.2} |
| TAIR | AT2G41700 | 0 | ATP-binding cassette A1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 2249859 | 2495488 | + |
![]() | |||
| Transcript Sequence | |||
Network for GWHGAAEX016696
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12698.6 | ABC2_membrane_3 | 184 | 482 | 1.00E-22 |
| PF00005.26 | ABC_tran | 582 | 723 | 1.10E-27 |
| PF12698.6 | ABC2_membrane_3 | 990 | 1392 | 1.50E-39 |
| PF00005.26 | ABC_tran | 1486 | 1628 | 3.40E-26 |
| PF00682.18 | HMGL-like | 1935 | 2213 | 1.30E-86 |
| PF08502.9 | LeuA_dimer | 2313 | 2458 | 7.20E-36 |
![]() | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05643 | ABCA3 | ABC transporters | map02010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009098 | Biological Process | leucine biosynthetic process |
| GO:0019752 | Biological Process | carboxylic acid metabolic process |
| GO:0003852 | Molecular Function | 2-isopropylmalate synthase activity |
| GO:0046912 | Molecular Function | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
| GO:0016887 | Molecular Function | ATPase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 71.440 |
| SRR2545915 | Juvenile tuber | 107.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.100 |
| SRR5643514 | five period of Gastrodia elata | 21.470 | |
| SRR5643515 | five period of Gastrodia elata | 22.930 | |
| SRR5643524 | five period of Gastrodia elata | 21.890 | |
| SRR5643525 | five period of Gastrodia elata | 36.890 | |
| SRR5643528 | five period of Gastrodia elata | 28.570 | |
| SRR5643658 | five period of Gastrodia elata | 38.320 | |
| SRR5643659 | five period of Gastrodia elata | 33.600 | |
| SRR5643660 | five period of Gastrodia elata | 39.600 | |
| SRR5643661 | five period of Gastrodia elata | 30.870 | |
| SRR5643662 | five period of Gastrodia elata | 31.760 | |
| SRR5643663 | five period of Gastrodia elata | 40.030 | |
| SRR5643664 | five period of Gastrodia elata | 40.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 53.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.84 |
| Juven | Juvenile tuber | 26.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.46 | |
| Mother_Juven | Mother tuber of Juvenile | 33.39 |

