Detail information of GWHGAAEX016698/evm.TU.scaffold_78.132


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218884687|ref|YP_002429069.1|5.00E-15DNA-directed RNA polymerase subunit H [Desulfurococcus kamchatkensis 1221n]
KOGKOG32183.00E-106RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
nrgi|695002486|ref|XP_009380333.1|3.67E-121PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Musa acuminata subsp. malaccensis]
Swissprottr|O81098|RPB5A_ARATH9.00E-107DNA-directed RNA polymerases II and IV subunit 5A
trEMBLtr|M0S433|M0S433_MUSAM1.00E-121Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P00920_001}
TAIRAT3G223203.00E-106Eukaryotic rpb5 RNA polymerase subunit family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008625015042505034+
Transcript Sequence

Network for GWHGAAEX016698

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03871.13RNA_pol_Rpb5_N4882.50E-31
PF01191.18RNA_pol_Rpb5_C1312031.50E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03013RPB5, POLR2E RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms434.920
SRR2545915Juvenile tuber250.200
SRP108465SRR5643513five period of Gastrodia elata115.420
SRR5643514five period of Gastrodia elata110.880
SRR5643515five period of Gastrodia elata104.050
SRR5643524five period of Gastrodia elata110.590
SRR5643525five period of Gastrodia elata206.240
SRR5643528five period of Gastrodia elata175.440
SRR5643658five period of Gastrodia elata221.340
SRR5643659five period of Gastrodia elata157.810
SRR5643660five period of Gastrodia elata171.490
SRR5643661five period of Gastrodia elata145.450
SRR5643662five period of Gastrodia elata167.230
SRR5643663five period of Gastrodia elata173.790
SRR5643664five period of Gastrodia elata188.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1142.610
SRR6049655Rhizomagastrodiae_C368-T10_good_1125.980
SRR6049656Rhizomagastrodiae_C368-T07_good_1131.840
SRR6049657Rhizomagastrodiae_C368-T07_good_1212.050
SRR6049658Rhizomagastrodiae_C368-T04_good_1198.810
SRR6049659Rhizomagastrodiae_C368-T04_good_1219.560
SRR6049660Rhizomagastrodiae_C368-T01_good_1168.280
SRR6049661Rhizomagastrodiae_C368-T04_good_1161.030
SRR6049662Rhizomagastrodiae_C368-T01_good_1102.330
SRR6049663Rhizomagastrodiae_C368-T01_good_1115.170
SRR6049664Rhizomagastrodiae_C368-T10_good_1128.200
SRR6049665Rhizomagastrodiae_C368-T10_good_1128.200
SRP279888GastroGastrodia elata tuber 200.33
JuvenJuvenile tuber166.36
Mother_GastroMother tuber of Gastrodia elata 145.88
Mother_JuvenMother tuber of Juvenile 149.51