Detail information of GWHGAAEX016700/evm.TU.scaffold_78.136
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116491817|ref|YP_811361.1| | 1.00E-07 | 50S ribosomal protein L34 [Oenococcus oeni PSU-1] |
| nr | gi|695077860|ref|XP_009386293.1| | 1.20E-40 | PREDICTED: 50S ribosomal protein L34, chloroplastic [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P82244|RK34_SPIOL | 9.00E-33 | 50S ribosomal protein L34, chloroplastic (Precursor) |
| trEMBL | tr|M0U7E1|M0U7E1_MUSAM | 4.00E-41 | Ribosomal protein L34 {ECO:0000256|RuleBase:RU000566} |
| TAIR | AT1G29070 | 5.00E-29 | Ribosomal protein L34 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 2567310 | 2572935 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016700
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00468.16 | Ribosomal_L34 | 100 | 134 | 8.80E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02914 | RP-L34, MRPL34, rpmH | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.890 |
| SRR2545915 | Juvenile tuber | 10.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.170 |
| SRR5643514 | five period of Gastrodia elata | 15.710 | |
| SRR5643515 | five period of Gastrodia elata | 11.440 | |
| SRR5643524 | five period of Gastrodia elata | 15.490 | |
| SRR5643525 | five period of Gastrodia elata | 9.830 | |
| SRR5643528 | five period of Gastrodia elata | 7.120 | |
| SRR5643658 | five period of Gastrodia elata | 8.070 | |
| SRR5643659 | five period of Gastrodia elata | 8.090 | |
| SRR5643660 | five period of Gastrodia elata | 8.440 | |
| SRR5643661 | five period of Gastrodia elata | 8.770 | |
| SRR5643662 | five period of Gastrodia elata | 8.360 | |
| SRR5643663 | five period of Gastrodia elata | 6.210 | |
| SRR5643664 | five period of Gastrodia elata | 8.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.22 |
| Juven | Juvenile tuber | 11.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.15 | |
| Mother_Juven | Mother tuber of Juvenile | 8.55 |