Detail information of GWHGAAEX016707/evm.TU.scaffold_78.143
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|403509238|ref|YP_006640876.1| | 4.00E-07 | EF-hand domain protein [Nocardiopsis alba ATCC BAA-2165] |
| KOG | KOG0027 | 4.00E-33 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|672132044|ref|XP_008789596.1| | 3.02E-57 | PREDICTED: probable calcium-binding protein CML36 [Phoenix dactylifera] |
| Swissprot | tr|Q9SS31|CML36_ARATH | 1.00E-33 | Probable calcium-binding protein CML36 |
| trEMBL | tr|M0TLB3|M0TLB3_MUSAM | 6.00E-37 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P00110_001} |
| TAIR | AT3G10190 | 4.00E-33 | Calcium-binding EF-hand family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 2648641 | 2649529 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016707
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 134 | 197 | 3.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.560 |
| SRR2545915 | Juvenile tuber | 21.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.300 |
| SRR5643514 | five period of Gastrodia elata | 15.450 | |
| SRR5643515 | five period of Gastrodia elata | 13.990 | |
| SRR5643524 | five period of Gastrodia elata | 26.060 | |
| SRR5643525 | five period of Gastrodia elata | 2.730 | |
| SRR5643528 | five period of Gastrodia elata | 7.550 | |
| SRR5643658 | five period of Gastrodia elata | 2.320 | |
| SRR5643659 | five period of Gastrodia elata | 23.700 | |
| SRR5643660 | five period of Gastrodia elata | 18.800 | |
| SRR5643661 | five period of Gastrodia elata | 15.580 | |
| SRR5643662 | five period of Gastrodia elata | 30.810 | |
| SRR5643663 | five period of Gastrodia elata | 6.580 | |
| SRR5643664 | five period of Gastrodia elata | 23.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.95 |
| Juven | Juvenile tuber | 0.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.81 | |
| Mother_Juven | Mother tuber of Juvenile | 1.01 |