Detail information of GWHGAAEX016723/evm.TU.scaffold_78.161
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332290735|ref|YP_004429344.1| | 9.00E-20 | leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5] |
| nr | gi|743807106|ref|XP_010927978.1| | 0 | PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LFS4|NIK1_ARATH | 0 | Protein NSP-INTERACTING KINASE 1 (Precursor) |
| trEMBL | tr|A0A067EYD3|A0A067EYD3_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO58880.1} |
| TAIR | AT5G16000 | 0 | NSP-interacting kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 2991603 | 2999113 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016723
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 30 | 69 | 4.00E-12 |
| PF00069.24 | Pkinase | 305 | 532 | 2.60E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.930 |
| SRR2545915 | Juvenile tuber | 7.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.940 |
| SRR5643514 | five period of Gastrodia elata | 3.500 | |
| SRR5643515 | five period of Gastrodia elata | 3.720 | |
| SRR5643524 | five period of Gastrodia elata | 2.780 | |
| SRR5643525 | five period of Gastrodia elata | 5.420 | |
| SRR5643528 | five period of Gastrodia elata | 2.100 | |
| SRR5643658 | five period of Gastrodia elata | 1.890 | |
| SRR5643659 | five period of Gastrodia elata | 0.430 | |
| SRR5643660 | five period of Gastrodia elata | 0.330 | |
| SRR5643661 | five period of Gastrodia elata | 0.200 | |
| SRR5643662 | five period of Gastrodia elata | 0.490 | |
| SRR5643663 | five period of Gastrodia elata | 0.130 | |
| SRR5643664 | five period of Gastrodia elata | 0.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.17 |
| Juven | Juvenile tuber | 1.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.20 | |
| Mother_Juven | Mother tuber of Juvenile | 1.86 |