Gene detail

Detail information of GWHGAAEX016724/evm.TU.scaffold_78.162

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|156938084\|ref\|YP_001435880.1\|	4.00E-125	replicative DNA helicase Mcm [Ignicoccus hospitalis KIN4/I]
KOG	KOG0479	0	DNA replication licensing factor, MCM3 component
nr	gi\|743869202\|ref\|XP_010905758.1\|	0	PREDICTED: DNA replication licensing factor MCM3 [Elaeis guineensis]
Swissprot	tr\|Q43704\|MCM31_MAIZE	0	DNA replication licensing factor MCM3 homolog 1
trEMBL	tr\|M0TTN6\|M0TTN6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P25830_001}
TAIR	AT5G46280	0	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	3021448	3040582	-

Transcript Sequence
>GWHTAAEX016724 AACCGATCCTCCTCTTTACTCCGGCCACAAATTGCTATCCCTAAAGGTAAAGCAAAGGCTTCTTTTGTCCTTCTTCAGCTATCTCAGTTCCCAGGTTTTGCTGATCCCATTTCGGTTGAAAATGGACGTCAACGAGGCAGTGATGGCCGATAACAAGCGCGCCATTATCGATTTCCTCGAACAATACGATAATGGATCCTACCTCACGAAGATAAGAGATATGATCCAGGCCAAGCGTTACCGGCTGATTATCGGCATGGATAAATTGCGCAGCTATAGAAGGGACCTTGCCCTGAGGTTGATTCGGAATCCAGGGGAGTTCCTGCAGCCAATGTCTGATGCTGTGACGGAGATTGCGCGAAGTGTGGAGAAGAGTTACCCGAAGGAAGGAAGGCAAGTGCTCGTGGGATTTGACGGCCCCTTTGGTTTCAACAGGGTTACTCCGAGGGATCTAATGTCTGCGTTTATCGGATCCATGGTCCGTGTTGAAGGGATAGTAACAAAGTGCTCTCTTGTAAGGCCAAAAGTTGTCAAGAGTGTTCACTACTGCCCTACAACCGGTTTATTCACAACTCGAGAGTATAGAGACATCACCTCTATGTCCGGCTTGCCTACTGGTTCTGTGTATCCAACACGGGATGAGCATGGAAACTTACTTGTGACCGAATATGGAATGTGTGAATACAAGGACCATCAGACGCTTTCAATGCAGGAAGTGCCTGAAAATTCTGCTCCAGGACAGCTTCCTAGAACTGTTGATGTCATCATAGAGGATGACCTAGTTGATTCATGTAAGCCCGGGGACCGAGTGGCGATTGTAGGGGTGTATAAATCTCTTCCCGGTAAAAGCAAAGGAAGTTTAACTGCAGTGTTCAGGACTGTTTTAATAGCAAATAATGTTTATCTTCTCAACAAAGAGGCATATGCCTTGATTTTAACTACCGATGAAGAAAAGAGAATCAAGAAAATAGCTAAGAGAAAAGATACATTTGATCTGCTGGGGAATTCAGTAGCGCCATCCATATATGGTCATCTGTGGATTAAAAAAGCAGTTATATTACTAATGCTTGGAGGCGTGGAAAAGAATTTGAAAAATGGAACCCATTTGAGAGGTGATATCAATATGATGATGGTTGGAGATCCTTCAGTTGCTAAATCTCAGCTTTTGAGAGCAGTCATGAACATCGCCCCATTGGCTATATCAACCACTGGTCGTGGTTCTTCTGGAGTTGGCTTGACTGCTGCTGTTACTTCTGATCAGGAAACTGGGGAGAGAAGACTTGAAGCAGGTGCCATGGTTCTTGCTGATCGTGGTGTTGTTTGTATTGATGAGTTTGATAAAATGAATGATCAAGATCGTGTTTCTATCCACGAAGTTATGGAACAACAGACAGTAACAATTGCCAAAGCAGGAATTCATGCATCATTAAATGCTAGATGCAGTGTGATTGCTGCTGCAAATCCCATATATGGGACTTATGATCGTTCATTGACGCCGACAAAGAATATTGGGCTTCCAGACTCATTGCTCTCTCGCTTTGACTTGCTCTTTATTGTTCTCGATCAAATGGATCCTGAAATTGACCGCCGGATTTCAGAACATGTCGCTCAAATGCATAGATATTGCGCTGATGGTGGAGGAGTTGGAGTCTTTGGTAAAGGTGCCAGATATACTGAAGAAGGTGATGGAGATGCCGATGCCGATGCACCAGTTTTTGTAAAGGGGAAGAAAGTTGAGAGGCTCACTATTAAGTTCTTAAAGAAGTACGTCTACTATGCTAAAAGTAGAATTCAGCCCAAGCTCACTGATGAGGCAGGTGAGCATATTGCAAATCTATATGCAGAGCTCAGGGATGGCAGCGGAAATTCAAAGACTGGAGGAGGTACACTTCCGATTACGGCAAGAACTTTGGAGACTATTATACGGCTCTCCACAGCTCATGCCAAATTAAAGTTTAGGAATGAGGTTTTAAAGGAAGATGTTGAAACTGCTCTGAAAGTCTTAAACTTTGCCATTTATCACCAAGAATTGACTGACTTGGAGGAGCGTGAACAAAGGGAAAGAGAGCTGGAGGTGAAACAAAAGGCTGATCATGACTCTGCCGTTGCCACTGATGTTGATGGAAGAGCAGATCCAATGGATGTAGATGAAGTTCATGAAGTAGAAGCAGAGGAAATTTCTCAAGAAAGGATTTATACTTTTGAAACTATTTTGGGTCAACATGTGCTCGCTAATCACCTTGACCAGATCTCTATCTCAGAAGTCGAACTACTACTTAACCGCGAGGCACCCGCACCCTACACTAGGCAGCAAGTTCAATATATTTTGGAGAGAATGCAAGATGCCAACAGAATAATGATTAGAGATGGAATAGTGAGAATTATATAATTAAAGCTTTGGCAAAGTGGCATCAATAGCAAGTTGGTATTTTGTTTTTGAAGAAGTTGAGCTGCATAAGCTAAATTTGTGACCTGTGGGATTTGAACTCTTGACTATAAATAGTTCAAATTCAATAGCTTAACCACTGAGCCACAACGCCATTCACGGTTGATATTTTGAACATGCAATTTGACGAGTGTCCATTTGTTTCATTAAAGAGTCTTTAGAACCACAAGAACTGCCTCTTTGTCTCCTAGTTTCTTTGCTTTGTAAGTAATGCTAGAAGTTGGGGTGCCTTAAGTTTGGAGCACCCAGTGAGAGCAATCAGTTTAAAAACATCTGAAATTACTATTGATCCCTATTGATTACAAGTTTTCTTATTTGATTTAAAATTTTTTATAAAGACACTAATTATGTTTAAAAATAATGTAATAAATTTCTTGTAGTTAGGATTGTTGAATAATA

Network for GWHGAAEX016724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14551.5	MCM_N	12	89	2.20E-13
PF17207.2	MCM_OB	109	239	1.20E-30
PF00493.22	MCM	277	629	2.20E-129

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02541	MCM3	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	Biological Process	DNA replication initiation
GO:0006260	Biological Process	DNA replication
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0042555	Cellular Component	MCM complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.100
SRP064423	SRR2545915	Juvenile tuber	4.060
SRP108465	SRR5643513	five period of Gastrodia elata	3.840
	SRR5643514	five period of Gastrodia elata	4.440
	SRR5643515	five period of Gastrodia elata	1.870
	SRR5643524	five period of Gastrodia elata	3.460
	SRR5643525	five period of Gastrodia elata	0.250
	SRR5643528	five period of Gastrodia elata	0.380
	SRR5643658	five period of Gastrodia elata	0.340
	SRR5643659	five period of Gastrodia elata	2.650
	SRR5643660	five period of Gastrodia elata	2.430
	SRR5643661	five period of Gastrodia elata	2.810
	SRR5643662	five period of Gastrodia elata	1.000
	SRR5643663	five period of Gastrodia elata	1.910
	SRR5643664	five period of Gastrodia elata	0.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.270
SRP279888	Gastro	Gastrodia elata tuber	1.03
	Juven	Juvenile tuber	2.04
	Mother_Gastro	Mother tuber of Gastrodia elata	0.34
	Mother_Juven	Mother tuber of Juvenile	0.35