Gene detail

Detail information of GWHGAAEX016725/evm.TU.scaffold_78.163

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|15668900\|ref\|NP_247704.1\|	putative ATPase RIL [Methanocaldococcus jannaschii DSM 2661]
KOG	KOG0063	RNAse L inhibitor, ABC superfamily
nr	gi\|672163277\|ref\|XP_008801480.1\|	PREDICTED: ABC transporter E family member 2 [Phoenix dactylifera]
Swissprot	tr\|Q8LPJ4\|AB2E_ARATH	ABC transporter E family member 2
trEMBL	tr\|M0THI6\|M0THI6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P14490_001}
TAIR	AT4G19210	RNAse l inhibitor protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	3051561	3072726	+

Transcript Sequence
>GWHTAAEX016725 GAAGTTTTAGCAAAGCACTTAAAAATTCTATTCTTCCTGCGTGCACAAGTCGAAACGGACGACCAGACCGACAGAGTTGCGGCGTCTGTCTCTGATTACAGCCGGCAGCGGCAAGTGGCGCGCTCGTTTTTCACTTCCGCAAACTTTCCATTTTGCGGATCAGTTGATTTTACGGAATCAAGATGGCAGATAGATTGACTCGGATCGCCATCGTCACCTCTGATCGGTGTAAGCCGAAAAAGTGCCGTCAAGAGTGCAAGAAGAGTTGTCCCGTGGTGAAGACAGGTAAACTTTGCATAGAGGTCACATCTGCTTCAAGAATAGCATTCATTTCTGAAGAATTATGTATTGGATGTGGTATCTGTGTCAAGAAATGCCCTTTTGAGGCAATTCAAATTATCAATTTACCAAAGGACCTTGATAAAGATACAACACATCGTTATGGGCCAAATTCGTTTAAGCTGCATAGGCTGCCAGTACCTAGACCTGGGCAAGTTCTGGGTCTTGTTGGGACTAACGGTATTGGGAAGTCTACTGCCCTTAAAGTGTTAGCTGGAAAGCTAAAACCTAACTTGGGTCGTTTTAATAATCCGCCTGATTGGCAGGAAATATTGACATACTTTCGTGGATCTGAGCTTCAGAATTACTTCACGAGAATTTTGGAGGATAATCTAAAGGCAATTATTAAACCGCAATATGTTGATCATATTCCCAAAGCTGTTCAAGGAAATGTGGGGCAGGTGCTTGAACAGAAGGATGAGAAAAATAAGAAGGCAGAGTTGTGTGATGATCTTGAGTTAAATCAAGTTATTGATCGTAATGTTGGGGATTTATCTGGTGGAGAGTTACAGAGGTTTGCTATTGCTGTAGTTGCTGTGCAAAATGCTGAGATTTATATGTTTGATGAGCCATCCAGCTATCTTGATGTCAGACAAAGGCTTAAAGCTGCACAAGTTATTCGGTCTTTGCTCAGACCAAACAGCTATGTCATTGTCGTGGAGCATGATCTAAGTGTCCTGGATTACTTGTCTGATTTCATTTGTTGCTTATATGGGAAGCCAGGAGCTTATGGGGTTGTTACTTTACCTTCTTCTGTACGGGAAGGCATCAACATTTTCTTGGCTGGTTTTGTTCCTACCGAAAATCTTCGCTTTAGGAATGAATCACTTACCTTTAAGGTTGCGGAGACTCCTCAAGAGAGTGCTGAGGAGATTCAATCATATCAACGATATAGGTATCCTACTATGATTAAAGCACAGGGTAATTTCAAACTTTCTGTGATGGAAGGTGAATTTACTGACTCCCAGATCATTGTGATGCTTGGGGAAAATGGAACTGGGAAAACTACATTTATTCGAATGCTGGCCGGATTGCTGAAGCCTGATTCTATTGAAGGTTCAGATGTTGAAATACCTGAATTCAATGTATCATATAAGCCTCAGAAGATCAGTCCCAAGTTTCCATCTACTGTGAGGCATCTGTTGCACCAAAAAATTCGGGACTCTTACGTGCATCCTCAGTTTATTTCTGATGTTATGAAGCCGTTGCAAATTGAGCAATTGATGGACCAAGAAGTTGTGAATCTGTCCGGAGGAGAGCTGCAGAGGGTAGCCTTGTGCTTATGCCTCGGAAAGCCTGCTGACATTTATCTGATAGATGAACCAAGTGCATATCTCGACTCCGAGCAGCGTATTGTTACATCAAAGGTGATAAAGAGGTTCATCCTGCATGCAAAGAAAACTGCGTTTGTGGTGGAGCACGATTTCATTATGGCAACTTATCTTGCTGACAAAGTAATTGTTTACGAGGGAAAACCGTCCGTCGATTGTACTGCCAATACTCCTCAGGCATTGGTATCTGGGATGAATCGTTTTTTATCGCATCTTGATATCACATTCAGAAGAGATCCGACTAATTATCGGCCACGAATCAACAAGTTGGATTCAACCAAAGATAGAGAGCAGAAAGCTGCAGGATCTTATTACTACTTGGATGATTAACGGTCTCACATGTTTATTATCCATTGCTTACATCGATATTACTGAAGAAATCATTGATATATCATCGTTTCACCAGCTTAATTAATATTTTAATTAAGCTTCCTCCCTGGAGATTAGTAAGCCTAATCTTGTACGGTCATTTGCTGCGCCTCTTCATCAGAGTTTTCCTCGGGAGTTTTTATTGTTTCCGGAATTAAAAATTTTGAACTTGTAGACTTGTTTTCTTTCTTACTATAGAGATGATGTGATAATGGTTTGTGGGGTTGCTAATTTTGTATTTATTCAATAATCATATTTATGTCGTGATTAAAATTGTAATGACTGTTTATTTGCCTGCTATCATGTGCTTTTCTCTGCCCCACTGCAAGATTAGTGCATTGTAATACATTGAGCCTTTTGAGTTTAGTTCTTTATTTGGAT

Network for GWHGAAEX016725

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04068.14	RLI	6	37	2.40E-13
PF00037.26	Fer4	49	71	1.40E-08
PF00005.26	ABC_tran	102	244	1.80E-17
PF00005.26	ABC_tran	368	496	3.60E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.910
SRP064423	SRR2545915	Juvenile tuber	41.590
SRP108465	SRR5643513	five period of Gastrodia elata	38.200
	SRR5643514	five period of Gastrodia elata	38.410
	SRR5643515	five period of Gastrodia elata	39.190
	SRR5643524	five period of Gastrodia elata	39.810
	SRR5643525	five period of Gastrodia elata	29.040
	SRR5643528	five period of Gastrodia elata	46.630
	SRR5643658	five period of Gastrodia elata	29.080
	SRR5643659	five period of Gastrodia elata	38.740
	SRR5643660	five period of Gastrodia elata	38.080
	SRR5643661	five period of Gastrodia elata	35.810
	SRR5643662	five period of Gastrodia elata	35.510
	SRR5643663	five period of Gastrodia elata	39.070
	SRR5643664	five period of Gastrodia elata	30.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.650
SRP279888	Gastro	Gastrodia elata tuber	44.72
	Juven	Juvenile tuber	48.71
	Mother_Gastro	Mother tuber of Gastrodia elata	28.15
	Mother_Juven	Mother tuber of Juvenile	50.38