Detail information of GWHGAAEX016729/evm.TU.scaffold_78.167
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269926487|ref|YP_003323110.1| | 4.00E-67 | DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC BAA-798] |
| KOG | KOG0221 | 1.00E-127 | Mismatch repair ATPase MSH5 (MutS family) |
| nr | gi|672199519|ref|XP_008777633.1| | 0 | PREDICTED: DNA mismatch repair protein MSH5, partial [Phoenix dactylifera] |
| Swissprot | tr|F4JEP5|MSH5_ARATH | 0 | DNA mismatch repair protein MSH5 |
| trEMBL | tr|D7T7Z8|D7T7Z8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI26657.3} |
| TAIR | AT3G20475 | 1.00E-127 | MUTS-homologue 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 3143141 | 3236054 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016729
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05192.17 | MutS_III | 7 | 309 | 6.50E-27 |
| PF00488.20 | MutS_V | 360 | 538 | 1.60E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0030983 | Molecular Function | mismatched DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.360 |
| SRR2545915 | Juvenile tuber | 3.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.050 |
| SRR5643514 | five period of Gastrodia elata | 3.160 | |
| SRR5643515 | five period of Gastrodia elata | 3.080 | |
| SRR5643524 | five period of Gastrodia elata | 2.600 | |
| SRR5643525 | five period of Gastrodia elata | 2.970 | |
| SRR5643528 | five period of Gastrodia elata | 3.800 | |
| SRR5643658 | five period of Gastrodia elata | 2.890 | |
| SRR5643659 | five period of Gastrodia elata | 6.200 | |
| SRR5643660 | five period of Gastrodia elata | 5.280 | |
| SRR5643661 | five period of Gastrodia elata | 2.960 | |
| SRR5643662 | five period of Gastrodia elata | 5.790 | |
| SRR5643663 | five period of Gastrodia elata | 6.690 | |
| SRR5643664 | five period of Gastrodia elata | 6.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.54 |
| Juven | Juvenile tuber | 1.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.89 | |
| Mother_Juven | Mother tuber of Juvenile | 1.58 |