Detail information of GWHGAAEX016744/evm.TU.scaffold_78.187


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|256828609|ref|YP_003157337.1|2.00E-08RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM 4028]
KOGKOG01181.00E-75FOG: RRM domain
nrgi|743807440|ref|XP_010928098.1|3.37E-144PREDICTED: RNA-binding protein cabeza-like [Elaeis guineensis]
Swissprottr|Q9LFE0|DOT2_ARATH6.00E-09SART-1 family protein DOT2 {ECO:0000305}
trEMBLtr|M0SDI8|M0SDI8_MUSAM2.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P10710_001}
TAIRAT5G556701.00E-75RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008635640493565830+
Transcript Sequence

Network for GWHGAAEX016744

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11842511.10E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14398CPSF6_7 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.540
SRR2545915Juvenile tuber10.730
SRP108465SRR5643513five period of Gastrodia elata19.750
SRR5643514five period of Gastrodia elata15.250
SRR5643515five period of Gastrodia elata18.840
SRR5643524five period of Gastrodia elata16.580
SRR5643525five period of Gastrodia elata34.250
SRR5643528five period of Gastrodia elata23.960
SRR5643658five period of Gastrodia elata29.250
SRR5643659five period of Gastrodia elata24.400
SRR5643660five period of Gastrodia elata28.950
SRR5643661five period of Gastrodia elata26.600
SRR5643662five period of Gastrodia elata30.180
SRR5643663five period of Gastrodia elata23.910
SRR5643664five period of Gastrodia elata26.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.750
SRR6049655Rhizomagastrodiae_C368-T10_good_111.520
SRR6049656Rhizomagastrodiae_C368-T07_good_116.540
SRR6049657Rhizomagastrodiae_C368-T07_good_117.050
SRR6049658Rhizomagastrodiae_C368-T04_good_116.230
SRR6049659Rhizomagastrodiae_C368-T04_good_118.350
SRR6049660Rhizomagastrodiae_C368-T01_good_116.790
SRR6049661Rhizomagastrodiae_C368-T04_good_114.690
SRR6049662Rhizomagastrodiae_C368-T01_good_114.250
SRR6049663Rhizomagastrodiae_C368-T01_good_114.870
SRR6049664Rhizomagastrodiae_C368-T10_good_114.000
SRR6049665Rhizomagastrodiae_C368-T10_good_114.000
SRP279888GastroGastrodia elata tuber 16.73
JuvenJuvenile tuber16.68
Mother_GastroMother tuber of Gastrodia elata 12.92
Mother_JuvenMother tuber of Juvenile 18.07