Gene detail

Detail information of GWHGAAEX016745/evm.TU.scaffold_78.188

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1525	0	Sister chromatid cohesion complex Cohesin, subunit PDS5
nr	gi\|672170843\|ref\|XP_008805490.1\|	0	PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Phoenix dactylifera]
Swissprot	tr\|O04716\|MSH6_ARATH	3.00E-08	DNA mismatch repair protein MSH6
trEMBL	tr\|M0SBP7\|M0SBP7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P04290_001}
TAIR	AT5G47690	0	binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	3599840	3642997	+

Transcript Sequence
>GWHTAAEX016745 ATCGAGCCTTTAATGTTCCAAAACCCGGGGTTTGATTTCTTTATATTTTGTTTAGATCGAACTCTGAACTTCCAAGTCGTCAAATCTCTAAGGCTTTGGCTCGATCATCTTCCGATGCATAAAAGCTGAAGTCTTTGATGAAAGCACCAAGACTTCCACTCGTTCCTTTTCCCTGACCTGGGAGAAAGAGTAAACGAAAACAAAGGAAAACCTTTGCTTTGCTTTTCTGCTTCTCTTTCTCTATCCGTTGGCCCCTTCCTCTCTCGCTTGGGTCTCAATTGAGACATGGCGCAAAAGCTGCAGCAGCTGAGAGAATTGGGCTTGAAGCTACAGAGTTCACCTGCTTCGAAGGATGCGCTGATCAAGCTCTTGAAGCAAGCGGAAAACTGTTTATCTGAATTGGAGCAGTCACCGCCACCGTCTATGCTGAGTGCAATGAAACCATGCTTTGATGCAATTGCAAAAGAAGATGTTTTGAAGCACCAAGACAGGGAAGTCAGAGTTCTTGTGGCAGCCTGTATTTGTGAGATCACCCGGATAACAGCTCCAGAAGCACCTTATAGTGACAATGTTCTCAGGGACATATTTGACTTGATTGTAAGTACATTTAGCGGGTTAAAGGATACTAATACTCCATCTTTTAAGAGGACAGTTATTATCTTGGAGACACTTGCAAGATACAGGTCCTGTGTTGTGATGCTGGATCTGGATTGTTATGACCTCATAAATGATATGTTTCAAATTTTTTTCAGTGTAGTTAGTGATGAGCATCCAAACAACGTTCGTACTTCAATGCAAACAATTATGATTCTTATTCTTGATGAAAGTGAGGACATACGGGAGAATTTGCTAATTACCTTGTTGTCTCCTTTGGGTCGTAAAAGAAATGAATTTACAATGGCAGCCAGAAGGCTTGCTATGAATGTGATACAGCATTGTGTAAGAAAGCTTGAACCTTCCATACGACATTTCCTTGTAACATCACTATCTGGAGACAGCAGTTACTCAAGTTGTTCACTTGATTATCATGAAGTTATTTATGATGTATATCAGTGTGTTCCTCAAATTCTTTCTGGAATAATCCCATTTATGACTGGAGAGCTGTTGGCGGATAAGTTAGAGGTTCGGTGGAAGGCAGTTCAATTACTTGGGGACCTATTTTCTTTATCAGGAATTCCTATTTCTGAGTCATTTCAGCCAGTTTTCTCAGAGTTTGTGAAAAGGTTGACTGATAGGGTTGTTGATGTTCGTGTTTCTGTGATTGGACACTTGAAGAATTGCTTGATGTTGAATACTTTTCGACCCGAGGCTCCTCTAATTATTAAGGCTCTTTCTGATAGGTTGTTAGATTATGATGAAAATGTTCGCCAGCATGTTGTTGCTGCAATTTGTGATCTGGCAAGCCATTCTGACAAAGTTATTTCAATTGACATTATCAAATTAGCAGCAGAGCGTCTTCGCGACAAATCTCTCTCTGTTAAACGGCACACCATGGAGAAGTTGGCTAATTTATACAAATGTTATAGCTTACAATGTGCAAATGATTTATTAAATTGTGATGACTTCGAATGGATACCTGGCAGAATATTACGTTGTCTATATGACAAAGATTTCAGATCAGAGACAATTGAATTCATTTTGTGTGGTTCTTTGTTCCCTCCTGATTTGACTATTAAAGCTAGGGCAAAACATTGGGTTAAAGTCTTTTGTACATTTGATAAAGTTGAAGTGAAGGCACTTGAGCAGATCCTGTTACAGAAGCAAAGGTTACAGCAAGAATTCCTGAAGTATTTGAGTCTTAGACAGGAAAATCAGGATAATGTTCCCGAGATCCAAAAGAAGCTTTCTGGTTTTTTTCGTATTATGTCTCGCTTGTTTCATGATCCTGTTAAGGCAGAAGAAGGTTTCAAGATGCTTAGTCAGTTGAAAGACCAGAATATCTGGAAATTGGTGAAGATCTTGCTGGATCCAGGCACTGGATTCTGTCAAGCATGGTCATGCCGGGATGAATTGCTTAAGATTCTTGGAGAAAGGCATTTACTTTATGAATTTATGGATATGCTTTCAGTAAAGTGCTCATACCTAATTTTTAATAAGGAACTTGTTAATGAAATGATTTTGGAAGCTGCTGAGCAAAGATCTTTTAGTGATGCAAAATCTGTTTTATCATGCATGAACCTACTAACGGTAATATCATCTTTTTCTCCAAACCTTTTTATTGGTTGTGAATATGATCTTGTGCATCTGCTGAAGGAGGACAGTGACATAATTAAAGAAGGAATTACTCGTGTTTTAGCAAAAGCCGGTGGAACCATTCGAGAACAATTGGCAATGACATCAAGTTCTGTTGACTTGGTACTAGAACGGCTATGTGTAGAGGGTACTCGCAAGCAAGCTAAATACTCTGTTCACGCCATAGCTGCTATTACCAAAGATGATGGTCTCAAATCCCTTTCGGTTTTATACAAGAGGCTTGTGGATATGTTGAAGGAGAAAACACATCTTCCATCCATATTACAATCCCTTGGGTGCATAGCACAAATTGCAATGCCTGTTTTTGAAACCAGAGAAGATGAAATTGTTGAGTTTATATTAAAGAAAGTTTTGAAATGCAGAATTGATATCCCTATTAGTTTGAACAATAATGATTGGAATGAAAGAACTGAGCTATGTTCATTAAAGATTCTTGGCATCAAAACTTTGGTTAAAAGTTATTTACCAGTCAAGGATGCACCTTCTCGAGCTGGGCTGGATAAGCTTATGGCTATACTTCGAAATATTCTAGCTTATGGCAATATCTCAGAAGATGTAGAATCAAGTGGTGTTGATAAGGCACATATGAGGCTTGCTGCAGCAAAATCTGTCCTTAGGTTGTCAAGACAGTGGGACCATATGATACCCCTTGACATCTTTTATATAACCTTGAGGATTTCTGAGGAGGTCTACCCCCAGTTTAGGACAATATTTCTTACCAAGGTGCATCAATACATTAAAGATCGCCTATTGGATGCAAAATACTCCTGTGCTTTCTTGTTAAACATAAGCCAGTATCAATCTCCTGAATATAAGGAGGCCAAACGTAATCTTCTGGAGGTGGTTCAAATTTTTCAGCAACTTAAACAACGACAAATTTCTATGCAAAATGATGTTAACTCTTCGGTCATGTATCCAGAAAGTATTCTTGTATATTTGGTTCATGCTCTTGCACACCACCCATCTTGTCCAAATATTGATGAATGCACAGAACTATCAGCCTTCGAACCCATTTACTGGCGGTTACATTTGTTTCTTTCTGTCCTGTTACACGGAGATGAAAGCTGGCAATTAGGAACTTGCTCTGATAGGAGAAAGTATAGTTATACTTCAGTTGTATCTATCTTCCGTAGTATCAAGTGTTCAGAAGATGCAGCAGATTGTGAAAGGTCTAGAACATCACATGCTATATCGGATCTTGGACTGTCAATTACGAAGAAGTTAATTCCTGATCTAGCCGATGTTTCAGAGATGCTTAATTCAGTTTCCTTGCCAGCCAGCTTATACAGGACTTCTGAGAAGGTTGAAGAGAGTTCCATAGCCAATGGTGAGCTGTCATGGCTGAGCGGTAAAGGTGCCCTGGCTCATTTTGATGCCCTTATGTTTGAGGATAAAGAACAGATCATCTCAGATGCAAACAAGGATGGGATGCTCTTAAAGGAGAAAGACAGTGATGATAATGAGGTACCTCTGGGGAAAATGATGAAATTGCTAAAAGCCCGTGGAACTAAAAAGAAAAAAGTGAAGACAAAGAGCTCAACTTTTGATTTAAAAAGTATGGATGAAGATGTTGATGTGATTAGAATGGTGCGAGAAATAAATTTAGACACCATAAATGCTGCCCGGAGTGTGGAAAATAATTATCAAAAAAAAAAGCGAGATGAAGTAACAGACAAGATAGCTGTTTCAACTCCTAAACGCAAAAGGTCAAGCATTATTTACAGGTCACCCCCTTCTAGCCTGGACAAGAAGCGGCATCTTATGGAATCAGACTTGCTACTTTCATCTTTACATAAAGTACAAAGCATTTCATTCAGGGGTGGAAAGAAAAAAAAAGATGGAATGAATAATGGTGATTTTGCTGTGAATAATCTAAAGAAAGTCTCTGGAACACTAAGCTCTGACAAGAAAGGTAGTGGCTCTAGAAGCTTTGGCACTTCAGCAAAAAGACGCAAAGTTAGAAGTATTTCTGGATTGTCAAAGTGTTCATCATATAAAAGTCAGCTGAATGAAGGACTGGTTGGATCTAGAGTTAAAGTTTGGTGGCCATTAGATAAGATGTTCTACGATGGTGTAGTGCATTCTTTTAATCCCGGAAACAAGAAACACAGTATATTGTATGATGACGGCGATGTTGAAGTGCTTCAACTAGAAAGGGAGAGATGGGAGCTTATTCCAGATAGCTGTAATGCCCCCGAAAAACAATCCAAACGCCAGCAGTTCTCATCACCTGAACAACTGCTGCCTGATTCTACTACTCATCTCCGAAAAAGGCGCACCTCAGGAAAAAGGGCCCAATCTCATCATGTCAAAGGGGGGTCCAAAAGTGACATCAATTCTTGCAAGAACAATGCTGATGCTAAGAGTGATTTGGAAGTATTAGGTGCTCATCATCTTTCGGGATCCGAGATCGATGATGCCAACTTAGAGTTTGAAGCCAAAGAATCACGGAGCCCGCTGAAAATGGACGAAGAAGCTAAAGCGAGCGCGCCGGAAACGGAGAGGAAGCAGGCTGGCGATTCCGACAATGAGCCCCTCAGTTTGTGGAGGAAGCGCACCTGTAAATCCGGCTGAAGGTTTCTCCGGCAAAGTAGGCAAATGCGGGTGTTTGTGTTCCTCTCTTGGCTCTTGACATTATAACATATATATCACCAACTCTGATGATTCTTTTTATGTGCGCCAAGCGTGTAATGTGTAGCTGCTTCTCATAGTGATAATTTTCATTGTTAGATATCTATATATACGATGGTTGTTGTTAGTGGGCGGTGCCATAAATGTATTGTTGTCAACTAGTTTGTATTGATAGACACTTTAACGAAGCATTTTAGAAAATTCTAGTCATATGCCCGGAATTTGCTTCAAAACCTTCCTATGTTAATTTTTTTTTCTTTGAAGTGAAGATTTAGCCCAATTTCATTCGAATGCAATATACTAGATGCTACATTTTAGTTGGAACTCAAGGGCCTCGGAACTCTCTCGGAAGCAAAGTGGAGCCGAATATTTTGGTGGTTGAAGTTCCATGCAGTATCTACAAATGTAGAATTTGCTCAAGTAATGGTATCGAGAAATTACACCCCGATACCTATTTTTAGTCTTTGATAAGGGGAAAAGGCTATGTTTGCGTTGATCAATAGTGCTCCAGCCTTCAGATTTGCCTCATCATAGTCTTCTCCGAGATTCTTTTGTTTGTTTGTTTTTG

Network for GWHGAAEX016745

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX016745
MAQKLQQLRELGLKLQSSPASKDALIKLLKQAENCLSELEQSPPPSMLSAMKPCFDAIAKEDVLKHQDREVRVLVAACICEITRITAPEAPYSDNVLRDIFDLIVSTFSGLKDTNTPSFKRTVIILETLARYRSCVVMLDLDCYDLINDMFQIFFSVVSDEHPNNVRTSMQTIMILILDESEDIRENLLITLLSPLGRKRNEFTMAARRLAMNVIQHCVRKLEPSIRHFLVTSLSGDSSYSSCSLDYHEVIYDVYQCVPQILSGIIPFMTGELLADKLEVRWKAVQLLGDLFSLSGIPISESFQPVFSEFVKRLTDRVVDVRVSVIGHLKNCLMLNTFRPEAPLIIKALSDRLLDYDENVRQHVVAAICDLASHSDKVISIDIIKLAAERLRDKSLSVKRHTMEKLANLYKCYSLQCANDLLNCDDFEWIPGRILRCLYDKDFRSETIEFILCGSLFPPDLTIKARAKHWVKVFCTFDKVEVKALEQILLQKQRLQQEFLKYLSLRQENQDNVPEIQKKLSGFFRIMSRLFHDPVKAEEGFKMLSQLKDQNIWKLVKILLDPGTGFCQAWSCRDELLKILGERHLLYEFMDMLSVKCSYLIFNKELVNEMILEAAEQRSFSDAKSVLSCMNLLTVISSFSPNLFIGCEYDLVHLLKEDSDIIKEGITRVLAKAGGTIREQLAMTSSSVDLVLERLCVEGTRKQAKYSVHAIAAITKDDGLKSLSVLYKRLVDMLKEKTHLPSILQSLGCIAQIAMPVFETREDEIVEFILKKVLKCRIDIPISLNNNDWNERTELCSLKILGIKTLVKSYLPVKDAPSRAGLDKLMAILRNILAYGNISEDVESSGVDKAHMRLAAAKSVLRLSRQWDHMIPLDIFYITLRISEEVYPQFRTIFLTKVHQYIKDRLLDAKYSCAFLLNISQYQSPEYKEAKRNLLEVVQIFQQLKQRQISMQNDVNSSVMYPESILVYLVHALAHHPSCPNIDECTELSAFEPIYWRLHLFLSVLLHGDESWQLGTCSDRRKYSYTSVVSIFRSIKCSEDAADCERSRTSHAISDLGLSITKKLIPDLADVSEMLNSVSLPASLYRTSEKVEESSIANGELSWLSGKGALAHFDALMFEDKEQIISDANKDGMLLKEKDSDDNEVPLGKMMKLLKARGTKKKKVKTKSSTFDLKSMDEDVDVIRMVREINLDTINAARSVENNYQKKKRDEVTDKIAVSTPKRKRSSIIYRSPPSSLDKKRHLMESDLLLSSLHKVQSISFRGGKKKKDGMNNGDFAVNNLKKVSGTLSSDKKGSGSRSFGTSAKRRKVRSISGLSKCSSYKSQLNEGLVGSRVKVWWPLDKMFYDGVVHSFNPGNKKHSILYDDGDVEVLQLERERWELIPDSCNAPEKQSKRQQFSSPEQLLPDSTTHLRKRRTSGKRAQSHHVKGGSKSDINSCKNNADAKSDLEVLGAHHLSGSEIDDANLEFEAKESRSPLKMDEEAKASAPETERKQAGDSDNEPLSLWRKRTCKSG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.420
SRP064423	SRR2545915	Juvenile tuber	36.720
SRP108465	SRR5643513	five period of Gastrodia elata	24.580
	SRR5643514	five period of Gastrodia elata	23.180
	SRR5643515	five period of Gastrodia elata	23.990
	SRR5643524	five period of Gastrodia elata	23.780
	SRR5643525	five period of Gastrodia elata	23.670
	SRR5643528	five period of Gastrodia elata	34.790
	SRR5643658	five period of Gastrodia elata	22.790
	SRR5643659	five period of Gastrodia elata	19.220
	SRR5643660	five period of Gastrodia elata	21.740
	SRR5643661	five period of Gastrodia elata	20.340
	SRR5643662	five period of Gastrodia elata	19.140
	SRR5643663	five period of Gastrodia elata	18.700
	SRR5643664	five period of Gastrodia elata	20.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.810
SRP279888	Gastro	Gastrodia elata tuber	27.83
	Juven	Juvenile tuber	32.09
	Mother_Gastro	Mother tuber of Gastrodia elata	32.88
	Mother_Juven	Mother tuber of Juvenile	40.87