Detail information of GWHGAAEX016750/evm.TU.scaffold_78.193
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672109541|ref|XP_008790623.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q0WVK7|PPR12_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor) |
| trEMBL | tr|M0TMN4|M0TMN4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P04810_001} |
| TAIR | AT1G05670_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 3828974 | 3837975 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016750
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 233 | 261 | 6.40E-07 |
| PF13041.5 | PPR_2 | 269 | 313 | 2.50E-15 |
| PF13041.5 | PPR_2 | 339 | 388 | 3.50E-12 |
| PF12854.6 | PPR_1 | 405 | 437 | 4.00E-09 |
| PF13041.5 | PPR_2 | 444 | 493 | 3.50E-15 |
| PF13041.5 | PPR_2 | 514 | 562 | 6.90E-15 |
| PF13041.5 | PPR_2 | 619 | 667 | 6.50E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.910 |
| SRR2545915 | Juvenile tuber | 7.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.290 |
| SRR5643514 | five period of Gastrodia elata | 7.600 | |
| SRR5643515 | five period of Gastrodia elata | 8.890 | |
| SRR5643524 | five period of Gastrodia elata | 8.650 | |
| SRR5643525 | five period of Gastrodia elata | 10.900 | |
| SRR5643528 | five period of Gastrodia elata | 10.780 | |
| SRR5643658 | five period of Gastrodia elata | 9.420 | |
| SRR5643659 | five period of Gastrodia elata | 8.980 | |
| SRR5643660 | five period of Gastrodia elata | 7.850 | |
| SRR5643661 | five period of Gastrodia elata | 9.260 | |
| SRR5643662 | five period of Gastrodia elata | 11.470 | |
| SRR5643663 | five period of Gastrodia elata | 9.620 | |
| SRR5643664 | five period of Gastrodia elata | 8.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.61 |
| Juven | Juvenile tuber | 11.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.64 | |
| Mother_Juven | Mother tuber of Juvenile | 13.35 |