Gene detail

Detail information of GWHGAAEX016751/evm.TU.scaffold_78.194

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383764384\|ref\|YP_005443366.1\|	3.00E-11	hypothetical protein CLDAP_34290 [Caldilinea aerophila DSM 14535 = NBRC 104270]
nr	gi\|672124134\|ref\|XP_008785441.1\|	0	PREDICTED: uncharacterized protein LOC103704071 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0RI07\|M0RI07_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P13810_001}
TAIR	AT3G09090	0	defective in exine formation protein (DEX1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	3840186	3863704	+

Transcript Sequence
>GWHTAAEX016751 ATGAGGCTGCTCTTGGGTCTCGTATCGGTCTCGCTCTTGCTTTCTGTATCGTTGGTTTCAGTATATGGCGTCTCTGATTTGAAGCAGGCGATCGAAAAGAAGAACAAATTTCGTGAAAGGCAGGCGGGCGATGATACGCTTGCTTATCCAAACCTAGATGAAGATTCTTTGTTAAATACTAAATGCCCGCACAACTTGGAATTGAGATGGCAGACAGAGGTTAGCTCTAGCATTTATGCTACTCCATTGATTGCTGACATTAACAGTGATGGGAAGCTTGAAGTAGTTGTGCCATCCTTTGTTCATTACTTGGAGGTGCTTGAGGGGTCTGATGGGGATAAGTTTCCAGGTTGGCCTGCTTTTCATCAATCGATGGTTCATTCCAGTCCTCTTCTTTTTGATATTGACAAGGATGGTACTAAGGAGATAGCCTTAGCAACATTCAATGGAATAATTCATTTTTTTAGATCCTCTGGCTATTTGATGATGGATAAACTAGAGGTGCCTCGGAGAAAAGTTCGCAAAGATTGGTATGTTGGATTGCGTCCAGATCCAGTGGATCGCTCACGTCCAGATGTACATGATGACCTGATTGTTAAAGGGGCTTCTGGTGTTACCGAAAACAAGTCAAAAGCAAGTTCATTGCCTAAGCAGAGCTCTAACTCTTCAAAAACATCTGCAAAGGAATATGAGGAACTTATATCTACTCGAATAAATTCTGAAAGTCAACACATTGGGCAGGTCAATAGCCAAGATAATAATACAACGGTGCATAATGTTTTACTTGAAAATATTGGCACAGAGAATAAAACCCTGCAGGTGTTGTTAAAAAGTTCTGAGAATTTCAATTCGAGCACACATAACGTGTCATTTGGAAATATTACCAGTGAAAATTCAACTCTAAGGAGACTTCTTCAAGACAGTGGTCAGCAGGGAATCTTTGAATCTCAGGACAATGATGGTATTGAGTCGCATGAAGCTACCGTAAAAAATGATGGAAACTTGGAAGAGGATGCTGACCAATCTTTTGATTTATTCCGGGGTGCAGAAGATCTATCTGACGAGTATAATTATGATTATGATGATTATGTTGATGAATCATTGTGGGGTGATGAAGAGTGGACTGAAGAAAAGCATGAAAAATTGGAAGATTATGTGAACGTGGATTCACACATCCTTTGCACTCCTGTGATTGCTGATATTGACAATGATGGTGTACAGGAGATGATTGTGTCAGCCACATATTTTTTTGATCGTGAGTATTATGATAATCCAGAACATTTGGCTGAATTGGGCGGTATTGATGTCGGCAATTATGTAGCAAGCAGTATTGTTGTTTTCAATCTCGACACGAAACAAGTGAAATGGACTGCTGAACTCGATTTGAGTACCGATTCTGGAAATTTTCGTGCATATGTGTACACTTCTCCTACTGTTATTGATTTGGATGGCGATGGGAATTTGGACATTCTTGTGGGCACCTCCTATGGCCTGGTTTATGCATTGGATCATCACGGCAAGGTGAGAACAAACTTTCCGCTGGAGATGGCAGAGATTCAGTCACAGGTTGTTGCAGCAGATATTAATGATGATGGAAAAATTGAAATACTAACCTCAGATGCGCATGGCAATGTTGCTGCTTGGACAGCACAAGGCGAAGAAATTTGGGAAGCGCATATTAAGAGTCTCATCCCTCAGGGACCCACCATTGGTGATGTTGATGGCGATGGCCATACTGATGTAGTGATACCGACAATCTCTGGAAACATTTATGTCCTCAGTGGGAGAGATGGCTCGTTTGTACGTCCCTTCCCTTACCGAACTCGTGGAAGGGTGATGAATCGAGTTCTTCTGGTCGACCTCAGCAAACGCGGTGAAAAGAAGAAGGGGCTAACTCTGGTCACTACCTCATTCGATGGCTATCTGTATCTAATAGACGGATCCACTGCATGCACCGATGTAGTGGACATTGGGGAGACCTCGTATAGCATGGTCCTGGCTGATAATATTGATGGCGGAGATGATCTGGACCTTGTCGTTTCTACGATGAATGGCAATGTTTACTGCTTCTCAACCTCGTCGCCTCACCACCCTCTGAAGGAATGGAGATCATCCAGCCAAGGAAGAAACAATCCTGGAGTTCGTTACGAGCGCGAGGGCGTATACATATCGCAATCCTCGAGGTCTTTTCGCGACGAAGAGGGGAAATATTTTTGGGTTGAGTTTGAGATAATAGATAAATACCGTGTCCCGTCTGGATTTCAAGGACCTTATAATGTCACTATGAACTTGCTGGTTCCCGGAAACTACCAGGGGGAGCGAAGAATTGTCTTCAATCAGATGTATAACGAACCCGGGAAGCAGCGAATGAAGCTTCCCACGGTGCCGGTTCGAACAACTGGCACCGTGTTTTTGGAAATGGTTGATAGGAATGGTGTCTACTTTTATGATGAGTTCTCTCTAACATTCCACATGCATTATTACAAGCTCCTAAAGTGGCTTTTGTTCCTCCCTCTGCTTGGAATGTTTGGCATTCTCGTGATCCTCCGTCCCTACGAAGGTTCGCCTCTCCCGTCGTATTCACGGAATCGAGATTGA

Network for GWHGAAEX016751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	154.050
SRP064423	SRR2545915	Juvenile tuber	144.500
SRP108465	SRR5643513	five period of Gastrodia elata	54.670
	SRR5643514	five period of Gastrodia elata	45.410
	SRR5643515	five period of Gastrodia elata	49.450
	SRR5643524	five period of Gastrodia elata	49.020
	SRR5643525	five period of Gastrodia elata	56.570
	SRR5643528	five period of Gastrodia elata	44.140
	SRR5643658	five period of Gastrodia elata	44.990
	SRR5643659	five period of Gastrodia elata	79.270
	SRR5643660	five period of Gastrodia elata	75.540
	SRR5643661	five period of Gastrodia elata	73.460
	SRR5643662	five period of Gastrodia elata	74.370
	SRR5643663	five period of Gastrodia elata	84.020
	SRR5643664	five period of Gastrodia elata	74.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	83.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	75.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	95.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	86.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	100.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	89.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	83.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	84.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	72.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	72.490
SRP279888	Gastro	Gastrodia elata tuber	90.74
	Juven	Juvenile tuber	93.76
	Mother_Gastro	Mother tuber of Gastrodia elata	60.93
	Mother_Juven	Mother tuber of Juvenile	77.60