Gene detail

Detail information of GWHGAAEX016752/evm.TU.scaffold_78.195

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|661892889\|emb\|CDP04047.1\|	2.65E-34	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068U6V9\|A0A068U6V9_COFCA	1.00E-34	Coffea canephora

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	3864979	3871356	-

Transcript Sequence
>GWHTAAEX016752 ATTTTTTTATAAGTGTCCCAAATCATCTTTTTTGATAACTAGGCAAAAATTTGTACTTAATAAATAATTTATTTACACGTTTATAAAAAACTCGTTTCTTATTCCTGAACGGAGAGAGGCCCATTGCACCCCCCTATGAAATCTTTGAGGTCGATGGGCATAAGCGCACATGGCTTATCCTTTCGTTCCAGAACCCCAAAACCCTAACCACTCAAAGCTCTTCACGAAGAGCGTCAATGACCAGTCCAGCCACTTTGACATGGCCCGCCTTCAGACTCTCGATAATGCTGCCGCCTCTTCTCTAATGCAGTTTATCTTGCGGCAGCGGGCGATCCCCGATTATGCCGTCAATGCCATCTTCCTCGCCCTTCCCCTCACCAATCCTTATTCGTCCAGCCTCAAGAAGGCCATTCTCCTTCGCAGCCTCGCCTCTAAGCTCTGCCTTCGCTTCGTCTCTGAGGAAACCCTAAACGTCATCGAACTCATCGAGGAGCTCGACCGCGAGAATGGCTGCCCCCCGCCCTCGGAAGCCATGAGGGCTGCTTACTGCGCCGTCGCCTCATTCTGCACCTCCTCCACCCTTCTTCAAAGCAAGGATGACTTCCTCGACTCCTACAACCGGATATGGCGACGGCGCATATCCGACATGGAGAAGTCCCCGGCGGCAGGCTTAGTTTCAGAGGAGCTTCTGGAGATGAGGAGTGTTTTTGAGGAGATGATCAGCCACTCCGACTGTCGCTCTTCCGCGCTGAATACCGATTTGGAGGTAGAAGCATTGGATCATGTTCGTGATTATCTGGAGGAGGTGTGGGATTTGGATCCCTTATTTCCCAACGCATCCCCAGATCATAAACATGGGGAGGATTTGGGAGTTCCCACTGAGCCGAGGGATCTCGCAGACGAAGTTTCAGGCTCTGAGCCTACTGACTTGGAACATCTTTTAATGGAAATTGATGTTGATGATGAGCAATCCTTAAAATCAAGGTGCCTGGATCTTCAAGGAATGGTGCAGAAAACTCCTGTTGATGCAACAAAAGAGCCTATTGAATTAGCATCTGTACATCCAAAAAAAGCACACCGCAAGGAATTAATTGTAAACGGCAATCAGGACATACTGGTTGAGCGGGCCTGTACTTCTATAATAGGTTCCAATGGCGCTAATATTGAAGGAAATGAGACAAGTACTATGTTAAATTTGAACTCTTCATGTTTGAAGGAAATGGACGGAAATGAAAATGGGCAGGATGATAGTGTTGCGGTGGCTTCTCTTGAGAAAGTACCTGTTATTGCACTTGATGTTGATGACGGGCAATCCTTAAAGTCAAGTTACCTGGATTTTCAAGGGGTGGTGCAAAAGACTCCTCTAGATGCAATAAACCAGCCTTTTGAATTACATGTAAACAGCAATCAGAACATGCTGGTTGAGCCGGCCTCTACTTCTAAAATAGGTTCCAATGTCACTAATATTAAAGGAAATGAAACAAGTACTAAGTTAAACAAGTTTTTGGACTCTTCATGTTTGAAGGAAATGGATGGAAATGAAAATGGGCAGGTTGTGTGTGCTGTGGTGGCTTCTGTTGAGAAAGTTCCTGATATTGCACTTGGTAAGGAAAGCTGCTCCATGCACAGCAGTGGTGTATCAGCTTCTCTTCCTAGAGCTAGTCTTATGGAAAGGAACGCAACTGCCCAGACACTTGAGTGGGCAGATTCGCCGCCCATGGAGGCTTTGAGATTTCATTTACACAGCCCTAAGAGGGAGGCTGTTTCGCCATTGAAGTTGATCGATGGCAAAAAATGCACTAGACGAAGGAAAATCAGGAAATGGACTTTGTTGGAAGAAGAAACTTTGCTGAAGGGTGTGAGAGAGTATGCACTCTTCTTCTGTAAAGCACTGATTTTGCTTATAGTGTGTATAAAGGAGAGAGCATTTGGCACCCACTCAAGTTTTGCATGGCAAAGGGAGCTGGAAGGCCATCCTGAGCAAGTATTCGGACGTTTTTGAAGAAAGAACTGAGGTTGACTTGAAGGACAAGTGGAGAAGTATGACTAGGTGTAAATGACCTTTGAATCTTGTACTTTTTTGTTATCTTTTTTGTGAGAAAGGGCGCCTCTTTTCTAACACTTCCTCTTTTGAAGGCTACGGGCCTAGGACCTGCTGCTATAAAGTTCTTTTTTTGGTGATCGCTGCAGGAGGTAACTTTTTCTGGTCAGTGATAATACATATATTATATTAGGACAGTTCGTTTTTATTATTACTCTACTTTGGTTGTATCATGCAATAGATACAAATCCAAAAATACGACTACTGGGATTTGAACTTCTGAGTGAAGTACAAATAAAAAAATCCAGACCATAGAATATAGTTTATAAGATTAGTTAAACTAAATTGAGCTCTGCTATGGTGTGTCAGCGTATAATTCATGATAAAAATTATTGTGGTCCATTGGATGAAGAGTCAGGGGTAGGATTGTAGTCAGCATTTTATGTCTTTTCCCCTTAAATCACACACTTTGAATTATTTGTTGGGATGTAAAATACTCTTCTATTTAATTTCCCTATGAATGATGTTAGGGCTTGGTGGAAATGTTTTAAATAGTTCAGATAGAGGAGCTTAGTCATTTGCCTTTGTAACCATGACTATGGTTCCTATGGCTTGTTTTTTTTGCCAAGTCTGATTGGGTTAGCTCTGACATGATCATTAAATTTATTTTGGAGATCTGTCTATATATTTTTGTTAAGGCTGGGGCTAGATATTATGCTTAGCCACCATCATATTTTTCCAAAGAAGAGTTAGAGGTCTATAATTCATAGTATATTTTTTGCAGTTTAGTTTATGTTTTTCGTTTTTTATTTTGCTGCAATCCGTAATTAAGTTATGTTTTTGTAATTTCTCTAGATCAACATTTCAACATTGAGCCTTTAGGGTGGAATGAAACTGTGGCCAAACATGGGTTGTTCCCAATTTTAGTTTTAGGTATTGAAATGAGGATATTGATGATGTTTTAATTTGTAATGAATGAGTATTGATGAATAAAACTTGATATGATTTGTAGAGTTTTGATGATAATACAATTATAATGAGTATTGATGAATTGCTTTAGTTTGTTGCAGATAAATT

Network for GWHGAAEX016752

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.110
SRP064423	SRR2545915	Juvenile tuber	19.960
SRP108465	SRR5643513	five period of Gastrodia elata	12.360
	SRR5643514	five period of Gastrodia elata	10.630
	SRR5643515	five period of Gastrodia elata	11.480
	SRR5643524	five period of Gastrodia elata	11.290
	SRR5643525	five period of Gastrodia elata	9.420
	SRR5643528	five period of Gastrodia elata	6.720
	SRR5643658	five period of Gastrodia elata	7.880
	SRR5643659	five period of Gastrodia elata	14.290
	SRR5643660	five period of Gastrodia elata	16.930
	SRR5643661	five period of Gastrodia elata	17.070
	SRR5643662	five period of Gastrodia elata	12.900
	SRR5643663	five period of Gastrodia elata	13.920
	SRR5643664	five period of Gastrodia elata	14.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.130
SRP279888	Gastro	Gastrodia elata tuber	15.26
	Juven	Juvenile tuber	19.19
	Mother_Gastro	Mother tuber of Gastrodia elata	7.24
	Mother_Juven	Mother tuber of Juvenile	12.74