Gene detail

Detail information of GWHGAAEX016754/evm.TU.scaffold_78.199_evm.TU.scaffold_78.200

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	2.00E-34	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|743781088\|ref\|XP_010920754.1\|	0	PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 6-like [Elaeis guineensis]
Swissprot	tr\|Q9M2V7\|AB16G_ARATH	0	ABC transporter G family member 16
trEMBL	tr\|A0A068TUS8\|A0A068TUS8_COFCA	0	Coffea canephora
TAIR	AT3G55090	0	ABC-2 type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	3980893	3984655	+

Transcript Sequence
>GWHTAAEX016754 ATGAAGGAAGACCAAGAAGAAGTAAAGGCCAGCAGGATGCCTAGCAGCTCCTTCGCCGGGGCTGACGATGCAGATGAAGCCACCGAGGCGATGTCCGTCGCCGGCCATCCTCCCTTCGTACTCACCTTCTCCAACCTCACCTACGCCGTCGATAGCTCGTGGCCAATTCGCCTCGTGCGAGCAAGGCAGCGCGCAGTCCTCCTGGACTCCATCTCCGGGCGTGCGGCCGAGGGGGAGATTCTCGCCGTCATCGGGTCCAGCGGCTCCGGCAAGTCCACCCTCATCGACGCCCTCGCCCGCCGCATCTCCCTCCCAACCCTCCCTGGCTCGGGCCTCTTTCTCAACGGCCACCCCTTGCCCTCCAAAACCCTCCGAGCCATCTCTGCCTACGTCATGCAGGAGGACCTCCTCTTCCCCATGCTGACAGTGGAAGAGACCCTGACCTTTGCAGCGGAGTTCCGCCTATCGCGGCACCTCCCCGCGGAGACAAAGCGGGACCGGGTCGTCGCCCTCATCGACCAGCTCGGTCTCGGCGACGTCGCGGGCACAATAATCGGGGACGAAGGACGGCGAGGGGTCTCGGGCGGGGAGCGGCGGCGGGTTTCGATCGGCATGGAGATCGTGCACGACCCGGTTCTCCTGTTCCTTGACGAGCCGACGTCGGGGCTCGACTCGCGGAATGCGCACGCAGTGATGCTGGTGCTACGGCGGATCGCGCGCTCGGGGAGCGTGGTGGTGAGCTCCATCCACCAGCCGAGCGCGAGGATCCTCGGCCTCGTGGACAGCCTCGTGATGCTGTCGGCGGGGAGGGCGGTGTACTTCGGGAGGCCCGATGGGCTCGCAGGCTTCTTCGGCGGGCTCGGGCTCAGGCAGATGCGGCCCGGGGAGAATCCCGCCGAGTTTGCCTTGGATGTGATTCATGAGATGGAAGGGAAGCAGCCTTCTCTAAGTCAGAGTCAGGCTTCATTTATAGGATTCTCTTCTGTTCATTCCTCGGATCTAACGCTTCCGGCCGCCATCCGCGCAAGAATCTCCCGCGGGAAAATATTGGCCCGCGATTCCTTCCTCGGTCATGCATCCTCCTCCTCATCAGCCTCCGAGGTTCCAGAATTCGCCAACACCTTCCTCACAGAGCTTGCCGTCCTGACCCGCCGCTCCTTCACGAACTCCATGCGCACGCCGGAGCTCTTCGCCGTCCTTCTTGGCACCTCCCTCGTCACCGGCGGCATTCTCTCCTCCGTCTTCTTCCGCCTCGACTCATCCCCCGCTGGCGTCCAGGAGCGCCTCAGCTTCTTCACCTTGGCCGTCTCCACCACGTACTACACCTGCGCCAACTCCCTCCCCATCTTCATCCAAGAGCGCAACATCTTTCTCCGAGAAACCTCCTACAATTCCTACCGCCGGTCATCGTACGTCCTCTCCAGCGCCCTCGTCGCCATCCCCTCCCACCTCTTCCTCTCCCTCGCCTTCGCTTCTGTCACGTTCCCGGGAGTCGGCCTCGCGGGCGGAACCCCCGGCTTCCTCTTCTACGCGCTCATGATTCTAGCCTCCTTCTGGGCGGGGAGCGGCTTCGTGTCCTTCCTGTCTGCCGTGATATCGAACGTAATGCTCGGCTACATCGTCGCCGTCGCCGTGTTGGCGTACTTCATCGTCTTCAGCGGCTTCTTCATTCACCGCGACAGACTGCCGGGGTACTGGATATGGTTTCACTACCTCTCGCTGATCAAGTACTCATACGAGGGGGTTATGCAGAGCGAGTTCGGGGACGAAAAGAAGTGCTTCGTCAGAGGAATGCAGGTGTTCGATGCGACGCCGTTGAGGGCGGAGGCGGATGAGGTGAAGAAGAGGGTGTTGGAGATGATCGGGAGCTCGCTAGGGATTGCCATATCGCCGGAGGCGTGCCTTACGACCGGAATGGATGTACTGAGGCAAAACGGCGTCACTCTGGTGGGAAGGTGGGCTTGCCTTGGAGCTACTCTTGCATGGGGTGTCTTCTTTAGGCTTTTGTTTTGCTTGGTGCTTTTGCTCAGGGGGAGGAACAGAAGAAGGGCCTTCTGATTAAAGGAATAAATCTTAGGGTTAACGCCATGACTTTAAGAAGTTTGGCGAATAATGTTACATCTGATTTATAAGTCATAGAAGGTTCTTTGATTTAAAGATTAAATTAGCTTATCTTAACTTTGCTAAGAAGCTATAAAACTAACTTAAATTTGTTTAACCATCATTAATTATGTGAGGAC

Network for GWHGAAEX016754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	68	221	3.20E-22
PF01061.23	ABC2_membrane	378	587	3.60E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.040
SRP064423	SRR2545915	Juvenile tuber	6.890
SRP108465	SRR5643513	five period of Gastrodia elata	19.470
	SRR5643514	five period of Gastrodia elata	9.190
	SRR5643515	five period of Gastrodia elata	6.150
	SRR5643524	five period of Gastrodia elata	9.460
	SRR5643525	five period of Gastrodia elata	1.630
	SRR5643528	five period of Gastrodia elata	0.560
	SRR5643658	five period of Gastrodia elata	1.580
	SRR5643659	five period of Gastrodia elata	4.430
	SRR5643660	five period of Gastrodia elata	3.180
	SRR5643661	five period of Gastrodia elata	3.650
	SRR5643662	five period of Gastrodia elata	1.940
	SRR5643663	five period of Gastrodia elata	1.250
	SRR5643664	five period of Gastrodia elata	2.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.120
SRP279888	Gastro	Gastrodia elata tuber	5.34
	Juven	Juvenile tuber	13.19
	Mother_Gastro	Mother tuber of Gastrodia elata	83.59
	Mother_Juven	Mother tuber of Juvenile	289.15