Detail information of GWHGAAEX016758/evm.TU.scaffold_78.204


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16163.00E-73Protein involved in Snf1 protein kinase complex assembly
nrgi|672183328|ref|XP_008811938.1|1.60E-92PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q84VQ1|KINB1_ARATH1.00E-73SNF1-related protein kinase regulatory subunit beta-1
trEMBLtr|D7T1F1|D7T1F1_VITVI1.00E-88Putative uncharacterized protein {ECO:0000313|EMBL:CBI24331.3}
TAIRAT5G211703.00E-735'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008640833044104643+
Transcript Sequence

Network for GWHGAAEX016758

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16561.4AMPK1_CBM871675.50E-28
PF04739.14AMPKBI2002704.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07199PRKAB Apelin signaling pathway map04371
FoxO signaling pathwaymap04068
AMPK signaling pathwaymap04152
Tight junctionmap04530
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922
Adipocytokine signaling pathwaymap04920
Oxytocin signaling pathwaymap04921
Longevity regulating pathwaymap04211
Longevity regulating pathway - multiple speciesmap04213
Circadian rhythmmap04710
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.930
SRR2545915Juvenile tuber20.970
SRP108465SRR5643513five period of Gastrodia elata71.120
SRR5643514five period of Gastrodia elata52.200
SRR5643515five period of Gastrodia elata66.660
SRR5643524five period of Gastrodia elata54.220
SRR5643525five period of Gastrodia elata51.310
SRR5643528five period of Gastrodia elata47.890
SRR5643658five period of Gastrodia elata107.390
SRR5643659five period of Gastrodia elata29.780
SRR5643660five period of Gastrodia elata30.940
SRR5643661five period of Gastrodia elata30.250
SRR5643662five period of Gastrodia elata26.210
SRR5643663five period of Gastrodia elata20.410
SRR5643664five period of Gastrodia elata42.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.100
SRR6049655Rhizomagastrodiae_C368-T10_good_126.330
SRR6049656Rhizomagastrodiae_C368-T07_good_128.500
SRR6049657Rhizomagastrodiae_C368-T07_good_151.050
SRR6049658Rhizomagastrodiae_C368-T04_good_162.140
SRR6049659Rhizomagastrodiae_C368-T04_good_184.870
SRR6049660Rhizomagastrodiae_C368-T01_good_141.670
SRR6049661Rhizomagastrodiae_C368-T04_good_161.180
SRR6049662Rhizomagastrodiae_C368-T01_good_113.420
SRR6049663Rhizomagastrodiae_C368-T01_good_121.070
SRR6049664Rhizomagastrodiae_C368-T10_good_116.260
SRR6049665Rhizomagastrodiae_C368-T10_good_116.260
SRP279888GastroGastrodia elata tuber 28.55
JuvenJuvenile tuber48.62
Mother_GastroMother tuber of Gastrodia elata 218.40
Mother_JuvenMother tuber of Juvenile 110.96