Detail information of GWHGAAEX016759/evm.TU.scaffold_78.205


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33861.00E-21Copper transporter
nrgi|672124196|ref|XP_008785472.1|9.56E-32PREDICTED: copper transporter 6-like [Phoenix dactylifera]
Swissprottr|Q94EE4|COPT1_ORYSJ6.00E-26Copper transporter 1
trEMBLtr|A0A068FMS4|A0A068FMS4_ONCHC7.00E-29Copper transporter 6 {ECO:0000313|EMBL:AID66717.1}
TAIRAT3G469001.00E-21copper transporter 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008641331534133775-
Transcript Sequence

Network for GWHGAAEX016759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04145.14Ctr641135.10E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14686SLC31A1, CTR1 Mineral absorption map04978

Gene Ontology

GO term OntologyName
GO:0035434Biological Processcopper ion transmembrane transport
GO:0005375Molecular Functioncopper ion transmembrane transporter activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.210
SRR2545915Juvenile tuber0.710
SRP108465SRR5643513five period of Gastrodia elata20.460
SRR5643514five period of Gastrodia elata18.350
SRR5643515five period of Gastrodia elata15.940
SRR5643524five period of Gastrodia elata12.430
SRR5643525five period of Gastrodia elata10.780
SRR5643528five period of Gastrodia elata8.170
SRR5643658five period of Gastrodia elata5.220
SRR5643659five period of Gastrodia elata3.960
SRR5643660five period of Gastrodia elata12.920
SRR5643661five period of Gastrodia elata6.930
SRR5643662five period of Gastrodia elata13.380
SRR5643663five period of Gastrodia elata8.680
SRR5643664five period of Gastrodia elata15.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.610
SRR6049655Rhizomagastrodiae_C368-T10_good_1187.260
SRR6049656Rhizomagastrodiae_C368-T07_good_154.870
SRR6049657Rhizomagastrodiae_C368-T07_good_124.570
SRR6049658Rhizomagastrodiae_C368-T04_good_167.440
SRR6049659Rhizomagastrodiae_C368-T04_good_164.230
SRR6049660Rhizomagastrodiae_C368-T01_good_123.410
SRR6049661Rhizomagastrodiae_C368-T04_good_135.830
SRR6049662Rhizomagastrodiae_C368-T01_good_197.380
SRR6049663Rhizomagastrodiae_C368-T01_good_158.760
SRR6049664Rhizomagastrodiae_C368-T10_good_1255.070
SRR6049665Rhizomagastrodiae_C368-T10_good_1255.070
SRP279888GastroGastrodia elata tuber 7.69
JuvenJuvenile tuber4.84
Mother_GastroMother tuber of Gastrodia elata 8.09
Mother_JuvenMother tuber of Juvenile 7.93