Gene detail

Detail information of GWHGAAEX016760/evm.TU.scaffold_78.206

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302877309\|ref\|YP_003845873.1\|	2.00E-07	Peptidylprolyl isomerase [Gallionella capsiferriformans ES-2]
KOG	KOG0543	0	FKBP-type peptidyl-prolyl cis-trans isomerase
nr	gi\|695075204\|ref\|XP_009384833.1\|	0	PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q7DMA9\|PAS1_ARATH	0	Peptidyl-prolyl cis-trans isomerase PASTICCINO1
trEMBL	tr\|B8AQ71\|B8AQ71_ORYSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC75329.1}
TAIR	AT3G54010	0	FKBP-type peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	4167542	4211814	+

Transcript Sequence
>GWHTAAEX016760 AAAAATCCATATGGAAACCCATCAAAATTCCATGTGTGGCGATTGTTCGAGACCGTTTGTCGGTAGAAACTTGCCTGAGAGAATTTCCTTTCTTCCACAATAACCTCACAGTGGTCTTTACTGCAGTCGCGTTTGTTTGTATTTATTCAGCTCTTCCAGGATTGCCATGGTCGTTGACCCCAAGCACCTGTCGTCTTCTGCTAGTTGAAGAGGATTGAGATCCGCATCGTGCTCTTGTTGTCGAGTTGAAATGAATATGTTGGCCATGGACTAGAAGCTCTGGGCAGACTTAGGATAGATCAGCAGCGACTTCAGAGATGGCCGTGGAAGAAAACCCGGAACAGCAGGAATATGCCTCGAAAAAGAAGAAATCTGATGACGAGTACGAGAAGAGAAAGAAAAACATTACTTCTGGAAGTTTGTTGAAGGCAATGATTAGATCCGGTGGAGGCACTACCAAACCTTTAGAAGGAGATCAGGTTATATTTCATTGCACCATTCGAACGGTAGATGGAATGACAGTTAACTCTACGAGAACAGAGCATGGAGGCAAGGGATATCCTAATAAGTGCATTATGGGCAAAAGCAAGATGTTGCTTGGGCTTTCTGAAGGGATTTTCACTATGTTAAAGGGGGAAGTTGCCATGTTTAAGATGAAACCAGATTTACATTATGCTGAAGTTGATTGTCCAGTCACTGCTCCAGATGGCTTCCCTAAAGATGTTGAACTTCATTTTGAGATCGAGATTTTGGATTTCTTTAAAGCGAAGATTGTCAGCGAGGACATGGGAGTGGTGAAGAAGATGATTGATGAAGGACAAGGATGGGAATGCCCAAGAGAGCCTTATGAAGTTGAAGCATGGATAACTGCAAAAGCAGCTGATGGCAAAATTATCCTTCCACGTTTGAACGAACCATATCAGTTTACTTTTGGTAAATCAGAGATGCCAAAAGGTCTCGAGATGGGAATTGGAACAATGGCCAAAAGAGAAAAAGCTGTAATATTTGTGAATGACAGCTACTTGACAAATTCTTCGTTAATCCAAATTCCTGAAGGCCATGAAGAGATTCAGTTTGAGGTGGAGCTTATCCATTTTACTCAGGTGCGTGATATGCTTGGTGATGGACGCCTTATTAAACGCAGAAAACGTGATGGAAAAGGTGATTTCCCTATGGATTGCCCACTTCAAGATAGTTTATTGAGGGTGCATTACAAGGGGATGCTTCTTAATGAGGAGAGAACAGTGTTTTATGACACAAGGTCCGATGACAATGACGAGCCTTTGGAGTTCTGTTCCGGAGAAGGATTAGTGCCAGAAGGATTTGAAATGTGTGTGCGTCTCATGCTTCCAGGAGAGATATCTGTCATTACGTGTCCCCCAGACTACGCATATGACAAATTTAAAAGGCCTGCAAATGTTCCTGAAGGCTCATATGTTCAGTGGGAAATTGAACTTCTTGGTTTTGAAACACCAAAGGATTGGACTGGTTTAAACTTTCAGAATATAATGGATGAAGTAGAAAAGATAAAGAGCACAGGGAACAGACTATTCAAAGAAGGGAAATATGATCTCGCCAAGGCCAAATATGAGAAGGTTCTTCGAGAGTATAATCATGTCAATCCTATGGATGATGAAGAAGGGAAAACTTTTGTTAATTCACGAAATACATTGCATCTTAATGTTGCAGCGTGTTACCAGAAAATGGGTGAATACAGAAAATCAATTGAGACAGCTAATAAGGTGTTAGATGGTAACCCTGTGCATGTTAAGGCTATCTATCGCCGTGGCATGGCATACATGTTAAATGGAGATTTTATGGAGGCACGGAAAGACTTTAATGAGATGATAAGCTTGGACAAGGCTTCTGAAGCTGATGCTAATGCTGCTCTCCAAAAGCTAAAACAGAAAGAGTTGGAAGCGGAAAGGAAAGATAAAAAGCAGTTCAAGGGGCTGTTCGATAAGAAACCTGGTGAGATTTCTGAAGTTGGAATCATGAATTGCACGGATGAGAAGAAGCCAGCGGATCCAGAACCGTCCGGCAGTGCCGCTGTCGGGGAGCCCCTTCTTGAGCCTGAGAGCAAGGAGGGGTTGGGGTTTCTTCCGCGCCTTTGGCCTTCCAGCAGACGATTCTTCTCAGCCCTTGGATTAAATCGCTGTCCCATCCTGTGATGGAGGGCATCTCCAGGTAAATATAGAACATTCACATTATAATAAGCTAATACATAAGTATAGTGATTAATAGATTAGTATTTAGCATTTTCATGTCATTTCAATGCTATAATTTGAAGTTATGATGCTAGGCATGTAAATGTTTTGTCATAATATACTCTTTCAATTTGTTTGAACCCCTCAGTAATAATCTACTTAAATTTTCTTCTTTCATGCTCCTAAATATTAATTGATCTCAGTGATATACTAAAATCTAAGAAAATAAGATTTTAGCATATTGGAATAACACTATATTCATTATAAG

Network for GWHGAAEX016760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00254.27	FKBP_C	46	145	5.80E-11
PF00254.27	FKBP_C	178	258	3.20E-05
PF00254.27	FKBP_C	293	381	1.60E-13
PF13181.5	TPR_8	485	516	0.046

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.060
SRP064423	SRR2545915	Juvenile tuber	54.190
SRP108465	SRR5643513	five period of Gastrodia elata	54.050
	SRR5643514	five period of Gastrodia elata	54.180
	SRR5643515	five period of Gastrodia elata	49.940
	SRR5643524	five period of Gastrodia elata	57.320
	SRR5643525	five period of Gastrodia elata	41.010
	SRR5643528	five period of Gastrodia elata	50.880
	SRR5643658	five period of Gastrodia elata	41.340
	SRR5643659	five period of Gastrodia elata	52.620
	SRR5643660	five period of Gastrodia elata	52.650
	SRR5643661	five period of Gastrodia elata	46.370
	SRR5643662	five period of Gastrodia elata	43.060
	SRR5643663	five period of Gastrodia elata	49.050
	SRR5643664	five period of Gastrodia elata	46.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.380
SRP279888	Gastro	Gastrodia elata tuber	61.08
	Juven	Juvenile tuber	55.66
	Mother_Gastro	Mother tuber of Gastrodia elata	44.40
	Mother_Juven	Mother tuber of Juvenile	41.12