Detail information of GWHGAAEX016767/evm.TU.scaffold_78.217
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|508606374|ref|YP_006992216.2| | 4.00E-08 | serine/threonine phosphatase stp [Carnobacterium maltaromaticum LMA28] |
| KOG | KOG0698 | 4.00E-123 | Serine/threonine protein phosphatase |
| nr | gi|297746002|emb|CBI16058.3| | 5.84E-138 | unnamed protein product [Vitis vinifera] |
| Swissprot | tr|Q9ZW21|P2C24_ARATH | 1.00E-123 | Probable protein phosphatase 2C 24 |
| trEMBL | tr|D7SK82|D7SK82_VITVI | 2.00E-138 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI16058.3} |
| TAIR | AT2G29380 | 4.00E-123 | highly ABA-induced PP2C gene 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 4448806 | 4450800 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016767
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00481.20 | PP2C | 78 | 345 | 1.70E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14497 | PP2C | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043169 | Molecular Function | cation binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.170 |
| SRR2545915 | Juvenile tuber | 28.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.540 |
| SRR5643514 | five period of Gastrodia elata | 27.020 | |
| SRR5643515 | five period of Gastrodia elata | 44.390 | |
| SRR5643524 | five period of Gastrodia elata | 19.950 | |
| SRR5643525 | five period of Gastrodia elata | 133.100 | |
| SRR5643528 | five period of Gastrodia elata | 118.680 | |
| SRR5643658 | five period of Gastrodia elata | 236.030 | |
| SRR5643659 | five period of Gastrodia elata | 59.880 | |
| SRR5643660 | five period of Gastrodia elata | 48.830 | |
| SRR5643661 | five period of Gastrodia elata | 72.520 | |
| SRR5643662 | five period of Gastrodia elata | 47.480 | |
| SRR5643663 | five period of Gastrodia elata | 41.150 | |
| SRR5643664 | five period of Gastrodia elata | 76.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 84.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 73.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 60.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 58.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 86.46 |
| Juven | Juvenile tuber | 20.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 152.93 | |
| Mother_Juven | Mother tuber of Juvenile | 45.09 |