Detail information of GWHGAAEX016771/evm.TU.scaffold_78.220
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166368999|ref|YP_001661272.1| | 6.00E-28 | serine/threonine protein kinase [Microcystis aeruginosa NIES-843] |
| KOG | KOG0305 | 0 | Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits |
| nr | gi|743780573|ref|XP_010920547.1| | 0 | PREDICTED: protein FIZZY-RELATED 3-like [Elaeis guineensis] |
| Swissprot | tr|Q8LPL5|FZR3_ARATH | 0 | Protein FIZZY-RELATED 3 |
| trEMBL | tr|M0SWD8|M0SWD8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P07090_001} |
| TAIR | AT5G13840 | 0 | FIZZY-related 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 4553934 | 4563341 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016771
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12894.6 | ANAPC4_WD40 | 256 | 336 | 8.80E-06 |
| PF00400.31 | WD40 | 407 | 443 | 0.00011 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03364 | CDH1 | Ubiquitin mediated proteolysis | map04120 |
| Cell cycle | map04110 | ||
| Cell cycle - yeast | map04111 | ||
| Progesterone-mediated oocyte maturation | map04914 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.340 |
| SRR2545915 | Juvenile tuber | 2.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.040 |
| SRR5643514 | five period of Gastrodia elata | 1.390 | |
| SRR5643515 | five period of Gastrodia elata | 1.410 | |
| SRR5643524 | five period of Gastrodia elata | 1.400 | |
| SRR5643525 | five period of Gastrodia elata | 0.210 | |
| SRR5643528 | five period of Gastrodia elata | 0.220 | |
| SRR5643658 | five period of Gastrodia elata | 0.260 | |
| SRR5643659 | five period of Gastrodia elata | 0.570 | |
| SRR5643660 | five period of Gastrodia elata | 0.850 | |
| SRR5643661 | five period of Gastrodia elata | 1.020 | |
| SRR5643662 | five period of Gastrodia elata | 1.270 | |
| SRR5643663 | five period of Gastrodia elata | 1.060 | |
| SRR5643664 | five period of Gastrodia elata | 1.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.53 |
| Juven | Juvenile tuber | 0.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.10 | |
| Mother_Juven | Mother tuber of Juvenile | 0.57 |