Gene detail

Detail information of GWHGAAEX016774/evm.TU.scaffold_78.226

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672165606\|ref\|XP_008802711.1\|	0	PREDICTED: paramyosin, long form-like [Phoenix dactylifera]
Swissprot	tr\|Q8VZ79\|IDN2_ARATH	1.00E-148	Protein INVOLVED IN DE NOVO 2 {ECO:0000303\|PubMed:19915591}
trEMBL	tr\|M0TX43\|M0TX43_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P03340_001}
TAIR	AT3G48670	4.00E-145	XH/XS domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	4630213	4680124	-

Transcript Sequence
>GWHTAAEX016774 GAGTATTCTTAGTATGATAAAATATCTCATTATACATAAGAGCAACAAGCCGGAAAAGGGAGAATAAACAACGCTTGCAAAACAAAACAGTGCTGACGCAGGGCTTTGTCGAAGTGTTCATTGGGTTTGCTTGGGTTAAATCGGACCCAAAGTGGTGCTCTTGATCGAGTCAGGCAAATCTTCCGTCTCCGTCAAAGCAACCGGAACTAGCAAGCCTTAAATTGGCCGGCCGCCTGCAAGGAGACGGCGGTTTCGTTATCTCCACTTTAACTGCAGAGTTTGTCTCGATCGGCGCCGTTGAACATATAGTCACAGCCTCCAGCGATTCTTCTTCGAAGAACCCATTCCTACATCCTTCAAGGTACATGGATCTGTTTTTTTTTAATTGCCAACAAATGAGAATTCCTTGAAAATGGCGCTTCCTCACATAGCCTGGCATTGTGCTGTACTGTTGACCCTACAGTTGTGGAACTTACACACACACACAAACGTGCATATATATATATATATACTATGCATACATACATATATGGCTTGTAGCATTTAGCAATGGGTTTCTATCATATAGCCTTACATCAACAAGCTTACCAATTTACTGTATCTATACAATGTCTGAATGCCTGTCTCATCAATTTGACATCCTATTTTATTCGGTGTCAGCTAGCGTGTATGCTGTTTTGGTTCTTCTCAGAATCAAGTTTTAGATATTTTGTTCTTCAAACAAATTTTTATCAAGAGCAGTGTGATTTACCATTGATGGATTACAGCTTCAGTGAAACTTCTGGAATTTGTGATTCAGAGATAGATACATATGAGGCTAACTTTTACCTGCAACTGAAGTTAGAAATGCTTATAGTAAAAGTTTCTGATAACATCTACAGATGTCCTTTTTGTCTGAAAAAGAAGACACAGAATTACCAGTACAAGGATCTTCTACAGCATGCTAGGGATACTGCTGCTAGCAACAAGAACACACTGGTGAAGGCAAAACACCAGGCCATTGTAAAATTCTTGAAGGAGGATCTTTGTGAGGATTCAAATTCAGCACAACTTATGAGTACTAAAATGGAACAGCTTAAAGCTGAACAGGATGAACAATTTGTTTGGCCCTGGACAGGCATCCTCGTAAATGTTCCAACAGAATTAAAGAATGGAAAATATGTAGGTGAAAATGGGATTCGGCTTAAGGAACAGCTCTCTAAATTCAATCCCTTAAAACTTCACACTTTATGCAATTTCAAGGGCCATACTGGAAATGTGGTAGTGGAGTTCAACAAAGACTGGACTGGATTTAGGGATGCAATGACTTTTGAAAACCATTTTTATGCAGATGATTTTGGTAAGATAAATTGGGTTGAGAAAAGGAATTCTGCTTCAGGACTTTATGGATGGGTGGCTCGTGTTGATGACTATAATTCAGGCGGTCCTATTGGAGATCATCTGCGAAAAAATGGAAATTTGAAAACTATTGATGATGTAATTAGCAAAGAATCAAATAAGGCGAGTAAACTTGTTCAAGAGTTGGCAATTCTAATTGAAGTCAAGAAGAAGCATATTGAGGAACTTGAGTTCAATTGTAATGAGGCAACATTGTCACTTTCTAAGTTGATGGAAGAACGGGATAAACTGCTTGAATCTTATAACAATGATATTCAGGGAATGCAGCGACTTGCATATGATCATTCTAGTATAATTTTTGATGAGAATGAAAAGTTAAGGATTGAGTTGGATTCTAAAAGAACAGAACTTGCTTTCAGATCCATGCAACTAGGTGCTCTGGTTGCTCAAAATGACTCTGAGATAAGGAAACTTGAAGATGAAAAAATGAAGAATGCTATGACTATTAGTATGCTCGAGTTGGCTTCATTGGAACAGCAAAAAGCTGATGATGGTGCTCTCAGGCTTGTTGAAGAACGTAAGAAAGAGAAAGAGGCTACTATCAAGAAGATAATTAATCTAGAAAAACAGCTAGATGCAAAGCAAAAGCTTGAACAAGAATTACTGCAGCTGAAAGGCAGTTTTGAAGCATTGAAGTCAATGGGCGGGGGTGACGGGATAATTCACAAGAAAATAGACAAACTTAATGATGAACTAAGAGAAAAAAATGAAGAAGTTGAAGATCTTGAAGAACTTAATCAAGCTTTGATTGTTAAGGAAAGAAAGAGCAATGATGAATTGCAAGAAGCTAAAAAAGAACTAATGGCTGGTGCTTCAGACATGCTCAACAACCGTACAATGATTGGAATAAAAAGAATGGGCGAACTTGATGAAAAGATTTTTCATGGTGCATGTATAAAAAGATACCGGAAAGATGAGGCAGATGTAAAGGCTGCAGAATTTTGCTCAAAGTGGCAAGATGAAATGAAAAATCCAGAGTGGCATCCTTTTAAAATGTCTATTGTTGATGGCAAGCTTAAGGATGTGATAGAAGAGGAGGATGAGAAGCTGGTTGGTCTGAAGCGTGAGCTGGGCGAGGAGGTCTGCAGCGCCGTTGCATCTGCCTTGCTGGAGATCAATGAGCACAATCCAAGCGGCAGGTACGTCACCAGTGAGCTCTGGAGTTTCAAGGCCGGACGCAAGGCCACTCTTCAAGAAGCCATCCACCATGTCATGATGCACTTGATTCCTTTCAAGCGCAGGCGATGACTATTATTATTTATTTTAATTTATTTTTTTAAGTAGTTGAGCTTAAAAAATGTGTGGTTAGTGTGATTTGAACTCTTGAGCTATCAAGAATTCAAACTTAAGAGCTCATTATTGAGCCATAGTACTATTTACAAATATTTGTAATGATATTTTCTATTCAATTTAATTAAAATATAGC

Network for GWHGAAEX016774

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03470.13	zf-XS	112	151	4.10E-11
PF03468.13	XS	181	290	1.10E-38
PF03469.13	XH	567	691	1.90E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031047	Biological Process	gene silencing by RNA

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.580
SRP064423	SRR2545915	Juvenile tuber	12.100
SRP108465	SRR5643513	five period of Gastrodia elata	7.480
	SRR5643514	five period of Gastrodia elata	7.000
	SRR5643515	five period of Gastrodia elata	5.620
	SRR5643524	five period of Gastrodia elata	6.920
	SRR5643525	five period of Gastrodia elata	4.560
	SRR5643528	five period of Gastrodia elata	4.100
	SRR5643658	five period of Gastrodia elata	5.700
	SRR5643659	five period of Gastrodia elata	6.490
	SRR5643660	five period of Gastrodia elata	5.460
	SRR5643661	five period of Gastrodia elata	6.310
	SRR5643662	five period of Gastrodia elata	5.160
	SRR5643663	five period of Gastrodia elata	5.470
	SRR5643664	five period of Gastrodia elata	5.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.520
SRP279888	Gastro	Gastrodia elata tuber	4.45
	Juven	Juvenile tuber	6.74
	Mother_Gastro	Mother tuber of Gastrodia elata	3.05
	Mother_Juven	Mother tuber of Juvenile	3.88