Detail information of GWHGAAEX016776/evm.TU.scaffold_79.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283782497|ref|YP_003373252.1| | 2.00E-17 | rhomboid family protein [Pirellula staleyi DSM 6068] |
| KOG | KOG2980 | 2.00E-27 | Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis |
| nr | gi|727694663|gb|AIY60687.1| | 3.97E-145 | rhomboid protein Phaam_PARL [Phalaenopsis amabilis] |
| trEMBL | tr|M0T605|M0T605_MUSAM | 7.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P11060_001} |
| TAIR | AT1G74130 | 2.00E-27 | Rhomboid-related intramembrane serine protease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000082 | 33478 | 89424 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016776
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01694.21 | Rhomboid | 161 | 313 | 4.80E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.260 |
| SRR2545915 | Juvenile tuber | 12.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.220 |
| SRR5643514 | five period of Gastrodia elata | 16.770 | |
| SRR5643515 | five period of Gastrodia elata | 13.760 | |
| SRR5643524 | five period of Gastrodia elata | 15.190 | |
| SRR5643525 | five period of Gastrodia elata | 19.410 | |
| SRR5643528 | five period of Gastrodia elata | 22.610 | |
| SRR5643658 | five period of Gastrodia elata | 14.580 | |
| SRR5643659 | five period of Gastrodia elata | 15.360 | |
| SRR5643660 | five period of Gastrodia elata | 15.500 | |
| SRR5643661 | five period of Gastrodia elata | 13.810 | |
| SRR5643662 | five period of Gastrodia elata | 11.900 | |
| SRR5643663 | five period of Gastrodia elata | 12.960 | |
| SRR5643664 | five period of Gastrodia elata | 10.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.48 |
| Juven | Juvenile tuber | 23.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.11 | |
| Mother_Juven | Mother tuber of Juvenile | 27.53 |